cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK068806     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os02g0232900 ( IRGSP 1.0 )
RAP - Chromosome No. 2
RAP - Location, Length 7,545,238 -  7,548,231  ( - );   2,994(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 7,545,238 -  7,545,864 ( - );   627 (bp)
Exon 2 Location 7,547,228 -  7,547,289 ( - );   62 (bp)
Exon 3 Location 7,547,473 -  7,547,895 ( - );   423 (bp)
Exon 4 Location 7,547,990 -  7,548,231 ( - );   242 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os02g0232900 Os02t0232900-01 J013160F10 204467 J013160F10 4043 LOC_Os02g13870.1 AK068806 32792 AP008208.2 255670529 BAF08289.1 113535906 NC_008395.2 297600179 NM_001052910.1 115445190 NP_001046375.1 115445191 Q40746 NIP11_ORYSJ


Chromosome: 2 ,  position: 7,545,238 - 7,548,231 bp

   Now loading


#
#
Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 attgccattg cagttgtatc cttcttcttc ttcttctttc tctactcacc tgcatctgta 
000061 gagagagaga gagagagaga gagagagaga gagagatggc aggaggtgac aacaactccc 
000121 agaccaccaa tggcggctca ggtcacgagc agagagccat ggaggaaggc aggaagcagg 
000181 aggagttcgc cgccgacggc cagggctgcg gcctcgcctt ctccgtccct ttcatccaga 
000241 aggtgatcat catttcatgt cttcttcttc ctcctgatct tgagagttct tgatcttgac 
000301 aatggcgggc gcgcgcattg atcgatcatg gtgtagatca tcgcggagat ctttgggaca 
000361 tacttcttga tcttcgcggg gtgcggggcg gtgacgatca accagagcaa gaacgggcag 
000421 atcacgttcc cgggggtggc gatcgtgtgg gggctggcgg tgatggtgat ggtgtacgcc 
000481 gtggggcaca tctccggcgc gcacttcaac cccgcggtga cgctggcgtt cgcgacgtgc 
000541 cggaggttcc cttggcggca ggtgccggcg tacgcggcgg cgcagatgct gggcgccacc 
000601 ctcgccgccg gcacgctccg gctcatgttc ggcggccgcc acgagcactt ccccggcacg 
000661 ctccccgccg gctccgacgt gcagtcgctc gtcctcgagt tcatcatcac cttctacctc 
000721 atgttcgtca tctccggcgt cgccaccgac aaccgagccg taagctacct agcacgattt 
000781 taattcattt aatttaattg ctccctccgc taattaatta tctagtttaa ttagtttcta 
000841 tatatctgta atttgattgc tccactaatt aggatcgatt tgatcctgat taatctgaaa 
000901 gttttgaagt gataattctg ttgaccatat gcatggatgc agatcgggga gctggcaggg 
000961 ctggccgttg gtgcaaccat cctgcttaac gtgctgattg ctgggtacgt tttaattttt 
001021 ctttctttca cgcatcatct ctctcatgat gataattaat taattactct tcacaatgga 
001081 aagtatttca aagaggatct agaggctgaa aatgtgttgg tatcgatcca cttctttcca 
001141 tgcccatgaa acatataggg tgtgtttagt tcatatcaaa attagaagtt tagttgaaat 
001201 tggaacgatg tgacggaaaa gttggaagtt tgtgtgagta gaaaagtttt aatgtgatgg 
001261 aaaagttgaa agtttgtaga aaaagttaga aactaaacca aaccaggcca tagtagtagt 
001321 agtagtatat aatttccagt caaaattaag aaaacaatgg gtcagattca gagttcagac 
001381 tagatcagat gtatgcgtcc ttttcggtag ggagagtgcg ttttgaagga gccaaagcca 
001441 accaataaat tcggtcatgt ggagcgcagg gctttgagtg tgctgcggtt ggtgcagtga 
001501 agatcggcca tgcactgcac tgcaaccaag cattaatgtc aacttaatta ctcctcctac 
001561 ctccggccgc ctagcttgta aattcacact ctccactcca cttcactcct cacccatggt 
001621 gcctgcctct caataactca ccgtttgata caggccctat ttagattcta ccttttctct 
001681 tcaaactttt aactttttcg tcgcatcgtt ctaatttttt caaaccttca attttaacgt 
001741 gtaactaaac acaaccatag ttgtgacatg atactatgga ccccgtttga tacagctcgt 
001801 actcgcgaaa ttaatccagg gttatggaat aggttttgtt attagtctac gtttaatact 
001861 tctaattagt gtccaaacat gtgatgtgaa aggaactaaa aaattttagt cccatccaaa 
001921 cagcccgtaa gatttttatc ccgtgaagtt ggaattgtac cgaacactcg ggtctacgac 
001981 ttaaacctta tgaatttgta gatttttgtt acacggttct caaactacaa tttcttcttt 
002041 tcacaatttc actaaggctt agataacttg ttcttatcta ttttttttca attaatgtat 
002101 aaataatgtt tagtcaattc ttataaacaa atgtccataa ttgagattaa ttagagtccg 
002161 taaaaaaagc tgaaacagag tttttgtgtt ttgttgaaga aaattcattt gtaccctttt 
002221 acctaccttt aaccagcatc attttatatt ggacaataat gatcaacaag ccctaataaa 
002281 gatttgggat gagagattca gagattcaga taattctttt tcaaaaaaaa aaatcagaga 
002341 ttgatgacat gtgcattttc tgttcaggcc gatctcggga gcatcgatga acccggctcg 
002401 gagcctgggg ccggcgatga tcggcggcga gtacaggtcg atctgggtgt acatcgtcgg 
002461 gccggtcgcc ggcgcggtgg ccggagcttg ggcctacaac atcatccgct tcaccaacaa 
002521 gcccctccgg gagatcacca agagcggctc cttcctcaag agcatgaacc ggatgaactc 
002581 ctccacctaa cctctatcta gctaaccacc aagaacccta attaattact actgccagta 
002641 ctactactgc tactttctgt tcgagatcga tatcgagatg cttgatcgat gcaccgcatc 
002701 gcatttaaaa gggaagagat ggatgaacta ctatttgtga cgtacacata tatagtagta 
002761 atttaattag cgttagttcg ttgtcgtctc ggctacgtgc cacaaggcct cctttgtaac 
002821 gcaggaattt tataggaatt ctgtgatgtg tgtttttaga tgtggggatt cctataaaat 
002881 tcgtgtggaa cttctctgcc tcctatatat gtagaactta aaaaatctat gtatatgtgt 
002941 gtgtggaata gtatgttttg gaccacgtga taaaattgca gagtgtttcc ttgc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs  
Acc. No. Clone Name Length
BJ464917 bags36j02 597 view details
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ516254 rwhfl51l09 672
more... (Total Hit Count: 15 )
/rice/oryzabase