cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK064401     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os02g0808800 ( IRGSP 1.0 )
RAP - Chromosome No. 2
RAP - Location, Length 35,420,287 -  35,422,119  ( - );   1,833(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 35,420,287 -  35,420,753 ( - );   467 (bp)
Exon 2 Location 35,420,867 -  35,421,219 ( - );   353 (bp)
Exon 3 Location 35,421,324 -  35,421,506 ( - );   183 (bp)
Exon 4 Location 35,421,600 -  35,421,754 ( - );   155 (bp)
Exon 5 Location 35,421,850 -  35,422,119 ( - );   270 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os02g0808800 Os02t0808800-01 002108H04 107456 002108H04 12956 LOC_Os02g56460.1 AK064401 1751 AP008208.2 255670529 BAF10374.1 113537991 NC_008395.2 297600179 NM_001054995.1 115449410 NP_001048460.1 115449411


Chromosome: 2 ,  position: 35,420,287 - 35,422,119 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 acaccaacat acggagttcg agtgacatac gagcagcagc caacacaagc tcgatcgaaa 
000061 gttctctcac aagttcagag tagcatttgg ttagtgacag taactggtca gcgtctctca 
000121 ccatgtcgtc caattttgag gccaacaaca acaacaatgg cgagaagcag ctggtctgtg 
000181 tgaccggagc aggtggcttc attgggtcgt gggtggtgaa ggagctcctc atccgtggct 
000241 accacgtcag gggaacagcc agggatcctg gtaagtacta gtactattag ttcacggtgt 
000301 ttgcataaat ttggtgcgtg ttgtgcttga tttattgatc ggttcttgca tgcgcgtatc 
000361 tgtagctgac agcaagaatg ctcacctgct tgagctggag ggagccgacg agaggctctc 
000421 cctctgccgc gccgacgtcc tcgacgccgc cagcctccgc gccgccttca gcgggtgcca 
000481 cggcgtcttc catgtcgcct ccccggtgtc taacgaccct gtaagttcac tagcctggtt 
000541 cctgagccca aaagagacga caatggcacc tttaacctcc tccaactttt actaatgctg 
000601 ctccgtgatg caggaccttg ttccggttgc agtggagggg acgaggaacg tgatcaacgc 
000661 agcggcggac atgggcgtgc gccgcgtggt gttcacgtcg tcgtacggcg ccgtgcacat 
000721 gaaccccaac cggagccccg acgccgtcct cgacgagacc tgctggagcg actacgaatt 
000781 ctgcaagcaa acagacgtaa gcacattact ctgctccgtt ctacggttct accaactcca 
000841 acagcgttgc ttacatgaac aataaattca tctcggcaaa ttttctcgtc gtacatgcag 
000901 aacctgtact gctgcgccaa gatgatggcg gagatgacgg cgacggagga ggcggcgaag 
000961 agggggctgg agctggcggt ggtggtgccg tcgatgacga tgggtcccat gcttcagcag 
001021 acgctcaact tcagcaccaa ccacgtcgcc cgctacctca tgggcaccaa gaagtcctac 
001081 cccaacgccg tcgcggccta cgtcgacgtc cgcgacgtcg cccgcgcaca cgtcctcgtc 
001141 tacgagcgcc ccgaggcacg cggccgctac ctctgcatcg gcaccgtgct ccaccgcgcc 
001201 gagctcctcc ggatgctcag ggagctcttc ccacggtacc ctgccactgc aaagtatgca 
001261 gatattagcc attgatttgc ttatgtgcat tgcttcattg ctcttgtgag atgcaatcga 
001321 tcgatctcaa attctcatgc gtgtgtttct tggatttttt tttcaggtgt gaggatgatg 
001381 ggaagccgat ggcgaagccg tataagttct cgaaccagag gctcaaggat ttgggtttgg 
001441 agttcactcc actgaggaag agtttgaatg aggcggtcct atgcatgcag cagaagggtc 
001501 acctgcctct gatttatccc gttccaaaac gtgcttacct ataaaatcaa gataaaaata 
001561 cgaattcgtc tgttgcgatg ggaaacagag agcaacaggg aaaaaacaaa ggaaaaaaaa 
001621 ggaaacacaa gggctctgag attgtttatt tgtgcaagtg tagtaggcat ttatattttg 
001681 ttcttacaca tgtaaaaccc ttctgtaatg aacaataagg tcccatggag ggaacggcaa 
001741 atgcaaatat ggccttcatt tgtattctgg gcttcaggat gtaaatttga atatcattgt 
001801 atttattttc tatgttgcag ggaatttccg agt

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BY845628 bart22f07 565
more... (Total Hit Count: 10 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ519759 rwhcs15n10 665
more... (Total Hit Count: 18 )
/rice/oryzabase