cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK061782     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os02g0629200 ( IRGSP 1.0 )
RAP - Chromosome No. 2
RAP - Location, Length 26,018,877 -  26,022,499  ( + ) ;   3,623(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 26,018,877 -  26,019,262 ( + ) ;   386 (bp)
Exon 2 Location 26,019,369 -  26,019,664 ( + ) ;   296 (bp)
Exon 3 Location 26,021,406 -  26,021,546 ( + ) ;   141 (bp)
Exon 4 Location 26,022,109 -  26,022,499 ( + ) ;   391 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os02g0629200 Os02t0629200-02 104568 001039E03 9413 LOC_Os02g41860.1 AK061782 34490 AP008208.2 255670529 BAF09405.1 113537022 NC_008395.2 297600179 NM_001054026.1 115447422 NP_001047491.1 115447423 Q6K215 PIP22_ORYSJ
Os02g0629200 Os02t0629200-02 104568 001039E03 9413 LOC_Os02g41860.2 AK061782 34490 AP008208.2 255670529 BAF09405.1 113537022 NC_008395.2 297600179 NM_001054026.1 115447422 NP_001047491.1 115447423 Q6K215 PIP22_ORYSJ
Os02g0629200 Os02t0629200-02 104568 001039E03 9413 LOC_Os02g41860.3 AK061782 34490 AP008208.2 255670529 BAF09405.1 113537022 NC_008395.2 297600179 NM_001054026.1 115447422 NP_001047491.1 115447423 Q6K215 PIP22_ORYSJ
Os02g0629200 Os02t0629200-02 104568 001039E03 9413 LOC_Os02g41860.4 AK061782 34490 AP008208.2 255670529 BAF09405.1 113537022 NC_008395.2 297600179 NM_001054026.1 115447422 NP_001047491.1 115447423 Q6K215 PIP22_ORYSJ


Chromosome: 2 ,  position: 26,018,877 - 26,022,499 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 aaccgcagca agctgcacag agctagcgtt agcttggtta gttgttctta gcattctagc 
000061 tagctcaatg gcgaaagaca ttgaggcgtc ggcgccggag ggcggcgagt tctcggcgaa 
000121 ggactacacc gacccgccgc cggcgccgct gatcgacgtg gaggagctga ccaagtggtc 
000181 gctgtaccgc gcggtgatcg cggagttcat cgcgacgctc ctcttcctgt acatcacggt 
000241 ggccaccgtg atcgggtaca agcaccagtc ggacgccacc gtcaacacca ccgacgccgc 
000301 ctgcagcggc gtcggcatcc tcggcatcgc ctgggccttc ggcggcatga tcttcatcct 
000361 cgtctactgc accgccggca tctcaggtcc caaattaaac cgatcagatc atgcacgctc 
000421 aacacaaaac tgaatcaagg ctagcgaaag gaacttaaca cggttgtgtg cgcgtgatcg 
000481 agcatggtgc aggtgggcac atcaacccgg cggtgacgtt cgggctgttc ctggcgagga 
000541 aggtgtcgct gatcagggcg gtgctgtaca tcatcgcgca gtgcctgggc gccatctgcg 
000601 gcgtggggct cgtcaagggg ttccagagct cgtactacgc gcggtacggc ggcggagcca 
000661 acgagctcag cgacggctac tccaagggca ccggcctcgg cgcggagatc atcggcacct 
000721 tcgtgctcgt ctacaccgtc ttctccgcca ccgaccccaa gcgcaacgcc cgcgactccc 
000781 acatcccggt gagttaatta tacgtgtgcg cgcctcacgc tgcatacttg cacactgacg 
000841 catgcactgt acatagtagt atacgctagt gttactgaat aaggcttaaa ctgatactcc 
000901 tactaattaa cgctagccaa ccactgctgc acacttcctg accgttgata gctactccgt 
000961 actttagagt tgattctagt gaccaaatgg cagggctgga tatcgattga tacagtgttg 
001021 agacttgagg aagctgttga atatggtttg ctagctttgc ataggaagaa cgtacttaat 
001081 ttaatttaga agcaatttta cggtttttaa ggagttaaca tgagattttt cactttttat 
001141 attataaatt tagtattcat aatagcttta gctaggtacc aagagaactg taaaattgct 
001201 cttaatttag tgtttagtcc tacttcagta tactgtagaa actagatata ttatatatat 
001261 aatcatgaac tatataatta gtatggagaa aacgtttagt acagctgccc gtataagaca 
001321 ctcatagagt agcactgtac tgaactatgt tgatgcacag taagactttg aacagttctc 
001381 ccagatcatc aaagctttaa gaaacactac agctaatttt cagagacttc tagctgcgaa 
001441 cttaattagc ttcattaaaa tagaaaaaaa acaaaaaaaa tagttaggtg gaaggagagt 
001501 atataacatt taacaataaa taaataatta ggtggaagaa gagtttattc ttgttttctg 
001561 acgaaataat cgttttggtt gatagctagg tgaaagaaaa acactaatca tcatcacaac 
001621 acaatatcaa cattctgtaa tccggaacct tccactctca aaattaaact accacgccaa 
001681 agtttgataa ggtcacaaac tacatacgta aagtatatga accttttttg cctttaattt 
001741 ataaattttg gtaatgtact ggtaatcaaa catataccca atttaatttc ctttcaaagc 
001801 taaaccatcc cacccctcgc cttcgcctgt ataatgacag acaggacttc ttcagaagat 
001861 aactctcgag tcttacatta cctgattaaa cagagtgcag tagttaatag gccgtgcaag 
001921 ttcatgaatc ctgacaaatt aactaagcat tttaatgacg cctaatttac aaattaactt 
001981 aatcagacaa tagaagtgac cctaattgtg cattacactc cagtcaacat cagacaccta 
002041 cgccgttgta tcttcttgcc ggatatgcat tgctgcattg catgccaata aacagatagg 
002101 acgattccct cgcgtaggca gcgcactgtt agtagtccct gtcttgctgt cgatcgtccg 
002161 cagcaaacgt gaggtggcaa atcgcaaatg gtcggtactt aatgaggaca tatattgatc 
002221 tatggatagg aacaaagagc aaaattccaa gagaaatttc tgacgatatg aaacgaacac 
002281 agcatcctac agatatactt ctccttcaga taccgtgaac cattcatttc caggaccacg 
002341 gacgatttta tttttaacag aaaaaacata atccactttg ggtcactttt gggttggaga 
002401 tggttttgga acgaaataaa ttattgtact ctgttttgtc attggctgtt tgacatcagt 
002461 atatgtcgaa catataacat gtttgcatga tgatttttgc cttaacgttt ttgttgatgt 
002521 gttcatcagg tgttggctcc tctcccaatt ggattcgcgg tgttcatggt ccatctggcc 
002581 accatcccca tcaccggcac cggcattaac ccggcgagga gcttgggaac cgcggttatc 
002641 tacaacaagg acaaggcctg ggatgaccaa gtgcgtaccc ctgacttagt aattaccttg 
002701 attaagctgc tggagtagta gtatcactat ctactgagaa caaactttgg tcacaagtaa 
002761 ccatctatta gtacgtgtta acaatatttc aaactaagta gacagtgaca cacacaggaa 
002821 atgtgctgac ttattgctca tgctcattag ctagctgaca aatgcatgaa taaacgaacg 
002881 gctcaggata agtctgtaga aaattaaaag aagtggctgg tgtcatttga tcgatttgtt 
002941 tagtgtaatt tgtctagttt atgcatgaca tacgcaatcc ctgaacgcaa tatacaacct 
003001 aatccccact acctttcagc cacctagaag atgccaacat ctgcaaccac ccgtttgccg 
003061 tacaccgtgt cttgatcgat catttaacta catacgcttg ctggaaccat gactaatcaa 
003121 atcattagaa gataatcagc cagcaataac aattggctaa tgatagcttg ttactttggc 
003181 gataataagt tatcgtttaa ctctgacgat gatgttattt gtgtttgttc agtggatctt 
003241 ctgggtgggc cccctgatcg gcgccgccat cgccgccgcc taccaccagt acgtgctgag 
003301 ggccagcgcc gccaagctcg ggtcctaccg gagcaacgcc tgagatcggc ggcggcggcg 
003361 cgcgcgaggt ggcgctgaag tgtagatacg cgtacaagat ggccgcctct gtccagcact 
003421 agatcaacga attcagcctt cgcatcctgc atttcgcctc gtggatagat tctactgcac 
003481 tattatgtac tatgtatcca tgcatatggt ctccattcct ttgaactatg tccgccatat 
003541 gttgcttccc gctggtgctt ccaagtttgg ttaattttcc ttcacattct gcatgtatgt 
003601 aatattcata tggagaattt gtg

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK250654 FLbaf84n11 1296
more... (Total Hit Count: 745 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ691673 whrd6f13 698
more... (Total Hit Count: 1030 )
/rice/oryzabase