cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK062250     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os01g0904700 ( IRGSP 1.0 )
RAP - Chromosome No. 1
RAP - Location, Length 41,116,960 -  41,118,905  ( - );   1,946(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 41,116,960 -  41,118,187 ( - );   1,228 (bp)
Exon 2 Location 41,118,851 -  41,118,905 ( - );   55 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os01g0904700 Os01t0904700-01 105186 001047G01 9586 LOC_Os01g67770.1 AK062250 38922 AP008207.2 255672756 BAF07039.2 255673973 NC_008394.4 297598437 NM_001051660.1 115441690 NP_001045125.2 297598139


Chromosome: 1 ,  position: 41,116,960 - 41,118,905 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 ggacttgatg aatgttcctg gcttaacaag agaaaacgtt gctagccatc tacaggtatg 
000061 acatatatgt tcaaacagta aactgctatg tttcattttc ttttataaaa ggggccaagt 
000121 ttcgacgtaa catattaaac agtcagttac agcgactgaa agattttaga ctggaagcac 
000181 tgaattcaga taactgcaca gagatctgtt ggtccagtca acagtacctg gtctgttatg 
000241 acaatatttt tgcaatattc agaaataagg cacatgaaga tcagaaaatg caaattttaa 
000301 tctgatacac agactttcta gtgcaataag gataatcctt ttaataagag aagaccgcct 
000361 ctatcagagg ttgcctagaa ctataggtca aagaagattc atagtttact gacagagaaa 
000421 gggatgctat ggtgtattca tgatagactt ttggatgtat acaatgagtt tctaacatga 
000481 tagacttttg gatgtattca tggctaaact cttaatgctg ttcttctgta ggaacatagt 
000541 tattgaatag cttcctctta aaccctaaaa aactcatttg caatctacat ttaactcaat 
000601 caattgcatc cttaccttat ttggacttgt ggttaattat gatgatcatt tggttgagct 
000661 gcttttacta tgattgtata gttgtagtat ttctaagaag aaaattaatt ctgtgcagaa 
000721 atatcgcctc tacctgagta ggttgcaaaa gcagaatgag gaaaggatat taggcgctgc 
000781 taggcaagat ttcagtcaca agggaacatc agaaaacctt aacctccgaa gttccttcca 
000841 agagcaacca agcaacatag caaatggata tccgcatgct tctcagaata tacaaactca 
000901 ggccaacatg ctagattctc agctagagga caccaagagc acagtgccct tgcctgtgcc 
000961 agataaaaaa agaactctag caagtgatgc tgctgactca cagaatgtca ccagtgcttc 
001021 aagtttaggt ggggttctgt ctttcaaaag catgccggtg aatcaggaca ggaagccatc 
001081 agaaacaatg atcttggaat gccaggcctg gaccggaggc attccatcga agcagttcat 
001141 gcagtatcca aagcataacc atgaacgctg tgacctatta ggggattatt catgcctgcc 
001201 aaagccagac ttagaacacc cagttggccc tagtaatctg tatgctccac cacctcttat 
001261 ctcaatgagt tgcggtatgg agggggatgc cagagacttc tcagacgtga agccagctat 
001321 tatggactgc atcaagtcct tatcaccggc gttgacatgt acagtggatt cagtttctgt 
001381 tcaacttagc gacagtgtgg tgacctcgat tgacggtgac ctgaagtctt ccggtgtgga 
001441 cgggttgccc agcattaaag attgttgcct tgatcagacg aacagccaag gaagtttgcg 
001501 tccttcgcaa gagccaagta tcataggcag cacagagttg gcttctctgc ctgaggactt 
001561 acccagttat ccacttcacg gtgtctccct tgagaatata ggactgagta gcattgactt 
001621 actaaactac agtgacgcaa tgatactatc cggactacaa agtaactggt atgatgatct 
001681 agagtttagc agcgaaatga tggactatcc atcgatagat gaatgtctct ttgcatcatc 
001741 ctgagctgcc gcccttcttt cgacaatgct attttgcgag gaaggatgat gttctttggt 
001801 atgttcccat atagctcctc ttgtagggct atagtcagct aacttgatcc tacggtggaa 
001861 ggatttaatt gtagtatctc cacttttgat aaatgtctgt attatagact gtgccatggt 
001921 ataagctata taccttttga atgatc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ727673 whvs18h03 821
more... (Total Hit Count: 9 )
/rice/oryzabase