cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK061086     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os02g0833600 ( IRGSP 1.0 )
RAP - Chromosome No. 2
RAP - Location, Length 36,709,515 -  36,710,688  ( - );   1,174(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 36,709,515 -  36,709,933 ( - );   419 (bp)
Exon 2 Location 36,710,094 -  36,710,171 ( - );   78 (bp)
Exon 3 Location 36,710,330 -  36,710,688 ( - );   359 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os02g0833600 Os02t0833600-01 103491 006206G05 9052 LOC_Os02g58670.1 AK061086 33220 AP008208.2 255670529 BAF10551.1 113538168 NC_008395.2 297600179 NM_001055172.1 115450071 NP_001048637.1 115450072
Os02g0833600 Os02t0833600-01 103491 006206G05 9052 LOC_Os02g58670.2 AK061086 33220 AP008208.2 255670529 BAF10551.1 113538168 NC_008395.2 297600179 NM_001055172.1 115450071 NP_001048637.1 115450072


Chromosome: 2 ,  position: 36,709,515 - 36,710,688 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 aatcttagag tctactagac tcacacacta gctttagctt agctaaaaga agaaaaagaa 
000061 aagagaggca caataatagg ttaggcatgg cggagcagct gggcggcgtg ggcagcccgc 
000121 agctaagcct gagcagctgc agctccttcc tttccatctc cagcgccggt accagcgccg 
000181 ccgatggtgc tccccatcta tccctcggcg tgggcggcgc cgaggagctg gatctgctgc 
000241 tgcaggtggg cataggcggt ggcggtggcg gcggcggcga cgaggaagag gaggagcgca 
000301 agaccatccg gatgatgaag aacagggagt cggcgctgcg ctccagggca aggaagaggg 
000361 taagaacctc taatccattt cctcatacta tctagtatag tactagctac tctattaatt 
000421 aatctctcgg atggatagat ggagtagtat ttggttccac actagtacta gttagctaat 
000481 tgcatgagct taattatgtg cgcggatgga tgtataggcg tatgtgcagg agctggagaa 
000541 ggaagttcgc cggctggtga atgagaatct caagctcaag aggcactgca aacaagttaa 
000601 cttcgtattc ccttccctaa tacttttatt actaataagt cgattcatca ctctacattt 
000661 ccaatccatc ttttatgtat atatatgtat gtgcatagaa tcctttgatt ttactacagg 
000721 tatattgtaa taataatgca ctatatccta tgcagcttaa gacggagatg gctgctctga 
000781 tccagcagcc taccaacaag cagagttccc accgaagaag ctcatccact tgatcagaac 
000841 gcagcagctt aagcctttaa ttaattaagc ataggcaagg tagcgggcag ccattggatt 
000901 ggggaccatt atttaattgg gttggctgtc cagctccagc aagagtctct agcaagtaac 
000961 aacaactcac tctgatccgc cggcttggct ttccatgcat tccggtagta cgtaagtact 
001021 ctattttgtt actgtgtcga tcatccgcta cacatggatg catacatgca tgcttaattg 
001081 tttgtgtcac cggctaactt ttgcataccc ttgtttgctt gcttgctgca agacccaaat 
001141 taatataaat tgtatgagac tcggattagc tgct

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs  
Acc. No. Clone Name Length
AK249012 FLbaf15j05 925 view details
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ662149 whkp11l15 653
more... (Total Hit Count: 12 )
/rice/oryzabase