cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK060914     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os02g0168800 ( IRGSP 1.0 )
RAP - Chromosome No. 2
RAP - Location, Length 3,715,358 -  3,718,242  ( + ) ;   2,885(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 3,715,358 -  3,715,575 ( + ) ;   218 (bp)
Exon 2 Location 3,716,303 -  3,716,708 ( + ) ;   406 (bp)
Exon 3 Location 3,716,882 -  3,717,085 ( + ) ;   204 (bp)
Exon 4 Location 3,717,552 -  3,717,729 ( + ) ;   178 (bp)
Exon 5 Location 3,717,833 -  3,718,242 ( + ) ;   410 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os02g0168800 Os02t0168800-01 103261 001035G03 8958 LOC_Os02g07230.1 AK060914 1206 AP008208.2 255670529 BAF07931.1 113535548 NC_008395.2 297600179 NM_001052552.1 115444474 NP_001046017.1 115444475 Q6H6D2 HEM3_ORYSJ
Os02g0168800 Os02t0168800-01 103261 001035G03 8958 LOC_Os02g07230.2 AK060914 1206 AP008208.2 255670529 BAF07931.1 113535548 NC_008395.2 297600179 NM_001052552.1 115444474 NP_001046017.1 115444475 Q6H6D2 HEM3_ORYSJ
Os02g0168800 Os02t0168800-01 103261 001035G03 8958 LOC_Os02g07230.3 AK060914 1206 AP008208.2 255670529 BAF07931.1 113535548 NC_008395.2 297600179 NM_001052552.1 115444474 NP_001046017.1 115444475 Q6H6D2 HEM3_ORYSJ


Chromosome: 2 ,  position: 3,715,358 - 3,718,242 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 ccatctttgg tctcctcccc ctccctctcg ctcgcatctt ccccggagat gccgccgccg 
000061 ccgagatgcg ccgccaccac cgcccaccac tccctcctcg gctcgcccac ctgcctcgcg 
000121 cgcccgcggc ggcggtgctg ccccgtgcgc gccgccgtcg ccgtccaggc cgaggcgcag 
000181 gccaaggtct cgctcatccg gattggcacc cgcgggaggt gatcgcaatc gatccaaccc 
000241 tttttttttc ttctccttct ctaattctgg gtgctgctcg tgtggataag cggtaaaatt 
000301 cgcgtatttt aggtgctgaa ttggtttgga tttggggtcg cggtggctgc gagatcttgt 
000361 tttcctctgg gaatttgggt gtttgagatg tggctctgac ccaattgcgt cgttagatgt 
000421 caggcattgc gagcactggt agaattcagg tatagagaat tgaggccgtt taccaagata 
000481 tgtgccttta gcttcgtttt gatggaattt tggatcagtg ataacatgcc attgttaaca 
000541 ttagtagtgc taaagaatag acttttgttc agttggcaaa agttggactt ttagatgttt 
000601 cccgtacgat tgttggtcaa cacgacaggt tgtattgttc ttgcgcttta tgagctagct 
000661 ggaagttaca tgtgattctt tgcacgattc tagacattag atgctttttt tttctgattt 
000721 taacttggat ctcgtgtaaa ttttgcatcc acattaaact cttatgagga attcacaaga 
000781 attgttatgg ttgctctctt ttcaatattg acttgaaagt gactttatgg ttgcgaaaaa 
000841 gggactttct ttcttttctt tgtttttaac aattttttct tgtgatagag tagcttattt 
000901 gagatatgca agtatgtaat tcaaattatt ggctgtatag gacagtcctc ttgcactggc 
000961 acaagctcat gaaacccgag acaagctgaa ggctgcacac tcagagttag ccgaggaggg 
001021 ggccgttgag attgtcatca ttaagaccac aggagacatg atcttggaca aacccctggc 
001081 agatataggt ggcaagggtt tattcaccaa ggagatcgat gatgcacttt tgcagggaag 
001141 gattgacatt gccgtccact cgatgaaaga tgttccaaca tatttaccag aaggcacgat 
001201 attgccttgt aatctcccac gggaagatgt gagagatgca ttcatatgct tgactgcaag 
001261 ttcccttgcg gagcttcctg ctggcagtgt tgttggaagt gcttctctgc gtagacaatc 
001321 tcaaattctc tacaaatatc catcactcaa agtaagtaca atgaccactt taatgacagt 
001381 tacagtatgc gttgtagatt tctattgtga aagggtggtg ttccatttca acttcgtaaa 
001441 aatatgacta gttcaggata tgcaatgcta gattcacatt ggttaatgta ggtctaggtt 
001501 ctaatgttag tgaatgcttt tcaggttgtt aacttcagag gaaatgttca aacacgattg 
001561 aggaaactca aagaaggaga tgtccatgct acattgttgg ctctagctgg actaaaacgc 
001621 ttaaacatgg cagaaactgc gacatctgta ttgtcagtgg acgaaatgct tccagcagtt 
001681 gctcaaggtg ctattggaat agcttgcaga agcagtgatg acacaatggt agggatctaa 
001741 tgttttaatt tgctagtaga ttaaagaaaa tcatagagtc tgcattcata atgccatacc 
001801 caaatctgaa ctgtgctacc ttttaattct ggtaaggtga caagttcaag cacctctagc 
001861 cttttttttt cttctgttct cagctgtggc acatcatgct gttaaaaaat gacagatgat 
001921 tgttcacaaa tctgatgacc ttgtcaacca acgcttcaca ttttcattta cctactccag 
001981 ccttgatcca tttgtttgtt gctctttatc ctgatcatgc tgcatatttt gaatatttta 
002041 acacctgata gactcaaaaa taaaatctat tagaatattc ttaatgcctg gcctcctgta 
002101 cagctatgca gaatgtgcca actgcttgca tgatctgttt catttttatg cactgaagct 
002161 agataatgag gctcttttgt ccttccttct gcagatgaat tacttgtcct cattgaacca 
002221 tgaagatacc agattagctg ttgcatgtga aagagaattc ttgtcagttc ttgatggcaa 
002281 ctgccgaact ccaattgcgg catatgcttc tcgtgacaag gatgggaatt gttcattccg 
002341 agggctattg gcttcacctg atggatctac aggtaccctt ttttgttcaa taaaatctat 
002401 gatgatacaa aacagctata ttttatcatg gaattaaaat gttttctttt ttttggtgtg 
002461 tgatgctgct tacagtatat gagacttcga gaactggacc ttatgatttc gatatcatgg 
002521 ttgagatggg taaagatgct ggccacgagc tgaaagcaaa ggctggccct ggcttctttg 
002581 atagcttgca atgaaaatag aaatccacca ttggccaact agagtgttga gtggattatt 
002641 ttgatttttt tttgtaccct agttctacta gaggattgta ccacaatgtt gagctgtctc 
002701 attcagatct gtatctttgc ttcttttagc aaggtgagct agaatttaga acgtggttcc 
002761 acggttattg taatcccttg tatttccaat gaattctgga agaggctttt gcggccaatt 
002821 atgttgtaac tttgtaattt gatgtaattt tgcagatgct ttgttttcaa aataatttga 
002881 ttctg

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK248170 FLbaf108h18 1496
more... (Total Hit Count: 16 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ692747 whsc10i04 702
more... (Total Hit Count: 7 )
/rice/oryzabase