cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK060255     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os02g0696700 ( IRGSP 1.0 )
RAP - Chromosome No. 2
RAP - Location, Length 29,499,008 -  29,501,614  ( + ) ;   2,607(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 29,499,008 -  29,499,050 ( + ) ;   43 (bp)
Exon 2 Location 29,499,171 -  29,499,575 ( + ) ;   405 (bp)
Exon 3 Location 29,499,655 -  29,500,007 ( + ) ;   353 (bp)
Exon 4 Location 29,500,094 -  29,500,339 ( + ) ;   246 (bp)
Exon 5 Location 29,500,662 -  29,501,614 ( + ) ;   953 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os02g0696700 Os02t0696700-01 001004E05 102478 001004E05 8516 LOC_Os02g46930.1 AK060255 31247 AP008208.2 255670529 BAF09730.1 113537347 NC_008395.2 297600179 NM_001054351.1 115448072 NP_001047816.1 115448073


Chromosome: 2 ,  position: 29,499,008 - 29,501,614 bp

   Now loading


#
#
Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gttattacgt ttccccgagc ttatcattca ggtttcagcc atggtgaggt ttcgttacat 
000061 ctacaattct aaatgctgtc agtgatatct ttatttaact gttggatatc tcaatattat 
000121 atttcattta atgaacattg taaaatgcaa aaacaactac caggttttaa ttgtggcgag 
000181 gcagtgaatt tcgctattgg agaatggttt cctctgggag cacttgctag tcaacgttat 
000241 gcacttttaa agaggacacc attactacct tacgaggaac ttctttgtaa agaggcggca 
000301 cttcttgatc atgaattttc tacctgtgat tataaagata caacaacatt agctggagaa 
000361 acacacagtc aacgctgtat gaaagttcct tttgttcagt tgatgagggt ccaacatcgt 
000421 atccgttggt cccttatgaa aatgggtgct cgcacgcatt ataaagcaga tattgatgcc 
000481 acagttctgt gtggaatatg tagacgcgac tgctacgtag cccacattat gtgtaactgc 
000541 agaattgatg cgatttgcct ttgccatggt aagattgtag taacaccaag tgttgatatt 
000601 ggctttattt gagttcatca tttttacttg tttaccttgt tttgaagagg aagagattag 
000661 gagatgccct tgcagttgtg atcgtgttgt atttgtgagg aaagacatat ttgaactgga 
000721 gacattatca aagaagttcg aggaggaaag tggaatactg gatgcagtca aaaagcaaat 
000781 ggctcgacgt gatggcgcta gtcagcattc taactttttc gattgtactg atcatgaagc 
000841 tgagtactac ccatactgca atattcacat agatccatcc ccagaaatat atagcatttc 
000901 agagacaaat tttgttgggt atgacttgaa caatccacat cctgctgcat caacagtaac 
000961 attttctttt gtaccccatg agtattctac acaaagtgat gtaagtctca ttcctgtgct 
001021 tattctaatg tttatttact gtttttagca actaaaaaga aactgatatt atttttatat 
001081 gtgcaggagt gtacaagttc taacagaaga gccttgtcta gctcttgtct cgagaataca 
001141 attacccctg aaaatgcaat tagtaatgct tgccagttat ctactcctga tcaaacatgt 
001201 ctgtctgaca aattggctgc acatgatact gatgattctg actgtgagat atttagagta 
001261 aagagaagat ctggcctaac tcctgagaaa agacacatgg aagatggaac aacaaatttc 
001321 actgggaatc aggtacagat atttctgtgg gtgcttctca taagatgatt aaaaatgctt 
001381 actctcctaa aagtagatgt ggtatagtat gtttgcagtt agtgtgtact tgcgaaaatt 
001441 caacagtcta tactaacgtt tcatgtctct ttaccttctc caaagaaata caaatgtgac 
001501 tgaagtgctg aacttcattc cagaaagtgc ttagaaattg gttacttaat cttacaaact 
001561 agatcaaggt gaattcgcag ggggcatgat tgaggtgaac tgaaaagtgc ttacaagatg 
001621 cttctgatag acaccttctt gttccttgtg gcaggtattg aaacggctga agaaaattaa 
001681 tgcacatgac agacaagaac ataagttacc tgaactatcc tgtggtgcaa ggagtgaacc 
001741 tgtccatact gatgattgta tacattgtgt tgacttcatt tctgaaaatg gagacgactt 
001801 catagctcca accaaattga agatgataca tcaactagat gcaaatattg ttgaggatga 
001861 agttgcttcc agccagaaat ataatagttg caactaccaa tctccatcta tagagcttgg 
001921 gccaaaacgc ttgaaaattc gtggcccatc ttttcccagc aggatttctg agctggaggt 
001981 atcttgtaga ttccaggaca atgacttggg cagccagcat gctcgatgac gactgctagg 
002041 ccattggttc taacactacg taagttaaca aacagcatcc ctaacttctg gaagctgaaa 
002101 gctcctacca gccaaggttt ccaaattgtt ggttggtcag ctggtaacag atggctcaga 
002161 tttaattctt ctgcgggcct ccaatagagg cattgacatg ggttcatggc tggattcttg 
002221 attttattgc tgggccacat ttgtggtagg gggctgaaag cagtaggcag acaattctga 
002281 tgtttttcca ctgtacatct tcacatacat ctcctttcac ctttctcgta ggtttttcac 
002341 tgtgaagagg ttagtctact accttaccaa tttctttcat tctttttgca cacatacaca 
002401 tgtacctaga atgcttaatc agatgcaaat atgaaattga tactgtagat cccatattga 
002461 gtcagttatt caactttcta ctggtctttg atctcttcat gtaatctcaa atgatcaaat 
002521 tttcttttgt cattattggt accggtacat ttgtctccag atgtgttgat aacttgattt 
002581 gttaataaat cgattgatgc tgacagg

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ581257 rwhrd11e04 735
more... (Total Hit Count: 2 )
/rice/oryzabase