cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK058965     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os02g0635000 ( IRGSP 1.0 )
RAP - Chromosome No. 2
RAP - Location, Length 26,315,517 -  26,318,583  ( + ) ;   3,067(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 26,315,517 -  26,315,925 ( + ) ;   409 (bp)
Exon 2 Location 26,316,467 -  26,316,646 ( + ) ;   180 (bp)
Exon 3 Location 26,317,218 -  26,317,511 ( + ) ;   294 (bp)
Exon 4 Location 26,317,765 -  26,318,046 ( + ) ;   282 (bp)
Exon 5 Location 26,318,269 -  26,318,583 ( + ) ;   315 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 RNA Nucleotide
Accession No		 RNA
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os02g0635000 Os02t0635000-01 100902 001020C07 5047 LOC_Os02g42330.1 AK058965 43321 AK058965.1 32968983 BAG86854.1 215765157 NC_008395.2 297600179 NM_001054052.1 115447474 NP_001047517.1 115447475
Os02g0635000 Os02t0635000-01 100902 001020C07 5047 LOC_Os02g42330.2 AK058965 43321 AK058965.1 32968983 BAG86854.1 215765157 NC_008395.2 297600179 NM_001054052.1 115447474 NP_001047517.1 115447475


Chromosome: 2 ,  position: 26,315,517 - 26,318,583 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gcggatgggg ttgtgctccc cgtccactcc tcgtcagctc ctctccaccg tcgctctctt 
000061 cgccttcggc gcaggcctcc tcgcctacgg cgtccacctc tcctacgccc acgtcgagcc 
000121 ccagcgggcg cgcacgctcg cccgcgacca gttcgtccgc gattacctca aaaggaagta 
000181 cgacaagtag cacacggcct ccccccctcc ccccaacgag atccccttcc cgctcaattt 
000241 cttgggaggg gtgggggagc gatggctttg gcccccgcga gctcgggcag tgggccggtg 
000301 gttacggagg tggagatgaa cgccggcgcc gaccagggtg ccaccggcac cgtgcgtgcc 
000361 accgtcgtgc aggcctgcac cgtgttctac gacacccctg cgactctcgg tgcgttctgc 
000421 catcttcgtt tatgctgttg ctgctgctgc tgctgcagct agtatcaccc gcgaggtgtt 
000481 cgattgtttg tctcgcccgt gtggctgttt ggattaggtg gtgcgcgcaa ggtgcttgct 
000541 tatttgtctc gcccgcacag cgacactaat ttacccacac gcaaaacacc gggagtgaac 
000601 tgaaactggg caggaagtag gatatctccg tgtgcgccaa tatttttatt tttagaaata 
000661 aggtcttacg acccggctta tattgaaagc caaacggctg tcttactggg gttacctatc 
000721 caatccctcc ctctagtgga ttaaccgaac atggccttaa tgaggtaatt aatgatttat 
000781 ctgcaatgat cctatctacc taatctagtg gagaatgaaa caagtaaata gttcaatgga 
000841 attaaaactg taaatgtatg atcatatgac atgttacttt ttatgaataa aatcctaaat 
000901 aaacggggta acgatattat gctaatttct ttaactgctt tgcactgcag ataaagcaga 
000961 gaaactggta gctgaagcag ctggatatgg ttcacagata gttctatttc cagaagtctt 
001021 tgttggtggt taccctcatg gatctacctt tggactgact attggcaatc gatctgccaa 
001081 gggaaaggaa gacttccata aatatcatgc agctgctata gatgtgcctg gtattctgaa 
001141 atagtttagt aattaatata tcgttgtcgt acgctatgtt tatcgagtgt ttccaaacca 
001201 aggtcttttg ctttatcatt ttcatttttt ttttaaagtt cagtgcttta ttttatttag 
001261 gttatcaatc tattagaaaa gacactgcta ttatctaaaa aaaaaagaaa atacactgct 
001321 aaatgtgaag tataaaccct gaaatatcaa tttcaaccat gttccctaaa ttgtgaaagg 
001381 taaaacagaa aaaaaaatga taaggagacc taactcgtga tgcagatccc aagctgataa 
001441 tcatatatga tagctatgca ttaatgaata aaagcattag taaccgccct tttttttttc 
001501 tgtagtaatg ttcagaattc gtgttgatca tatccatctt aacttttttt ttccgtcaat 
001561 taattcagtt aaaatacgtc ttacatcatt ttttagctat tctccggttc tccccactta 
001621 atatctagct ttccttgcta cagaggatat gcactatgca gtgcccctgc aagacatttt 
001681 accgacttct gttgaatgca ggtccagagg tgacccgctt agctgcattg gctggaaaat 
001741 acaagatttt cttggtgatg ggggtggttg aaagggtagg gtacacacta tataatacag 
001801 tgctcttctt tgatcctctg gggaaatacc tcgggaaaca ccgcaaggtc atgcctactg 
001861 gactggaacg agtgttttgg gggtttgggg atggatctac tatacctgtt tatgatactc 
001921 caatagggaa gattggtgcc gtcatttgct gggaaaacag aatgccactt ctcaggacag 
001981 caatgtacgc taaaggtatt cctagttcta gcaatatgat atgtttctcg acctgagcaa 
002041 gtactctggg ttaaagttat atcgattggt aatgcaaaga agttaagagt taagacacca 
002101 caaaagggat actagggttg ttcatttgtt agacactact accttgaaaa aaaaaaggag 
002161 aaatgtactt tgagtgactc tgaagatgca ccatgtatca tgtgcttgag tttatatttt 
002221 acctgaagta tcttctacat tcatgcaggt gttcagatat actgtgctcc aactgctgat 
002281 ttctcgccta gttggcaggc ctccatgacg catattgccg ttgaaggggg atgctttgta 
002341 ctttctgcaa accagttttg tcgcagaaag aactatccac cagcgcctga atatactttt 
002401 ggtggccttg atgaagagcc atccccagaa tctgttattt ggcctggagg aagttccatc 
002461 gtctcaccat ctggaacagt tctggcaggt ccaaactatg aaggcgaggg cctcctcaca 
002521 gctgacttgg gtaagaaacg tggaaccttc aagtaaattc catgctcact tgttgactac 
002581 tacatcccag cccttttttc atatgtagta gcagttggtg tagatgtatc cagctgtatt 
002641 tgtgcaatta tttctacaga tatcagatta taaccctctg cccaaagaac agtattgtaa 
002701 ccgtgaaaca ccacaagaac actaaagaga aattgcatgg tatgttttgc agaccttgga 
002761 gaaattgctc gagctaagtt tgatttcgac gtcgtgggac actatgcacg acccgaggtg 
002821 ctgagcctga ccgtgaaaac cgaatcaaag ctgcccgttt cttttacttc tgctgcagag 
002881 aaaaattctg ctgcaaagag tgacggtatc tctaggacct gatggccatt aatcttccat 
002941 cgcggtgtgc aataaaattg tcagctggcc agtgttggta tcacatgaat aatctgtctt 
003001 tagtttcttg taaagatttg gagacgatgc ttccctgata aacaattggt gcctatagtg 
003061 ctgtaat

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK249964 FLbaf56l12 1469
more... (Total Hit Count: 10 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ945557 whchul14k06 704
more... (Total Hit Count: 94 )
/rice/oryzabase