cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK287446     Link to RAP-DB ( IRGSP 1.0 / Build5 )
RAP ID Os01g0101300 ( IRGSP 1.0 / Build5 )
RAP - Chromosome No. 1
RAP - Location, Length 62,350 -  65,302  ( - );   2,953(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 62,350 -  62,783 ( - );   434 (bp)
Exon 2 Location 62,877 -  63,020 ( - );   144 (bp)
Exon 3 Location 63,339 -  63,431 ( - );   93 (bp)
Exon 4 Location 63,665 -  63,779 ( - );   115 (bp)
Exon 5 Location 63,902 -  64,152 ( - );   251 (bp)
Exon 6 Location 64,248 -  64,431 ( - );   184 (bp)
Exon 7 Location 64,628 -  65,302 ( - );   675 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No
KOME
Clone ID
KOME
Clone Name
Tigr ID cDNA
Accession No
Os01g0101300 Os01t0101300-01 J043016L21 303080 J043016L21 LOC_Os01g01130.1 AK287446


Chromosome: 1 ,  position: 62,350 - 65,302 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 ggaaaaaaaa attggtcccg cccgccgacc gccgccgcgc cccctctccc gcccgccgcc 
000061 cgccgccgcg ccccctctcc cgccgcccgc cggccgcgcg cctcctctcc cgcccgccgg 
000121 ccgcgcgcct cctctcctgc cggccgccgc cccgcctctc ccgcccgccg gccgccgccg 
000181 cgactcctct cccgccgcct gctccagatc cggtcatcgt cgtctcggtc gtcgttgtcg 
000241 tcgtcccggt cttcgtcgta gtcgtctcct gccgggtcgt catcgtcggg gcggcgggtt 
000301 acgggcccac ggctctcctc agtgcctctc tcctcggggc gtccgttcag ccatggcgcc 
000361 gccgccgccg catcgaccct acaagcgccc cgccatctcc gaccagcagc gccgccgcga 
000421 cctcgccctc caggcccagt ctgcccgccg cgctgacgcc caggcgcgcg cccgcagcct 
000481 cgccaactcc cttctgtccc cgtcctctgc cgctgccgac acagcagtgg agggcgacag 
000541 cgagcgcgat catgagccca ccgtcgccga ggccgcttcc aagcttcgcg gctccgatgc 
000601 gcgccgctgg ttcgcccgcc agatcatgct cccggagtgg atggctgacg ctcctcccca 
000661 cctcgccacc gactggttgc taccttcccc tccctctccc aactccttct ctttactact 
000721 acgcatttca attcgagtac ccctgttatg ttagttatga ttcttaacct gcaaatttca 
000781 cttttactgc ttattaaact gtatgtagta tactactact actacaagtt tcaacaaagg 
000841 atcggcctca acaattcttc tctatgtgta ggcatgtttt tgccagacct gccgggaaac 
000901 ggtgcttggt cgtctcttgc aacggcatca ccattagcag gctccgaaat ggatccattc 
000961 tccaccgatt cccttccgct cttccaaatg gatcaaagag agacatctcc ggaccagcaa 
001021 gttcctattc catccttgat tgcatctttc atgaggtgct accacctgat ccatccttct 
001081 tgacctgcct tttctttctt tcgtttttgg cttgttcatt cataacgttg tcgtctctct 
001141 tgtgctgcag cctgatgaaa catattacat cattgatatg atctgttgga gaggctactc 
001201 cttgtacgac tgcaccgctg agtttaggtt cttttgggtg aattctaagc tcatggagac 
001261 cactgctggt gatcctccat caacgtacca tcgctacaga ttcagtgctg tccctatata 
001321 cgagtgcacg cttcagggtc ttcaagcagc atactcagga agcacaccat atgtgaaaga 
001381 tggcttgctg ttttacaaca agtaacttct ctttctacct ttgatgatgt cttctttgtt 
001441 agacatgccc tcatatctgc taactgcctt tacagtttac atcactgcat tgactaactg 
001501 tttgttgtct tttctcttaa aaggcatgca cattatctag ctggtatcac accccttgca 
001561 ctggtctgga aagatgaggc ttgtagtcaa tatgttattg acacagatag caagggacaa 
001621 gtcccaagtg agcagcatgt atgtttcatt ctttcaatgt ttgcttcatg ttgcagctag 
001681 caagataatt attttgccga tagaactcca ttttggggca ttttgtttct ctttacaaaa 
001741 gggcatcata tttaataatt atcatcttca atactctcag acgaagatgt tgtcaactct 
001801 gatgccctgc tactacttct gttccccaat acaaaacttc tcacgtgcct tgtttcttcc 
001861 tgtacaatca gattgtgctg gatctgcaag aggatggaaa gcttactact tctgatgatc 
001921 ctccagttgt ctttggtagc ttggacaatg aattcattca gaaggtactg ttgtgtaatg 
001981 cagcctacat taaaaaaagt gataattaca taggattata tgctttcatg gttccccgat 
002041 ttttaagggt ggaaatctgc atcagagtac cttccacatg gtgctccaag cttttagttg 
002101 ttgatatgaa accaatgaat ggttatgttg attgtatacc ctatctggaa gtgttacaat 
002161 gctatgctta taaagtaacg tgcttatcct gattaggcac cagaagtgcc ttcctgcact 
002221 gtgatttcag tccttgcctg aacctgtttg aagcattaac ttactgttac atggctgtac 
002281 agtcaaacct gcggccaggg aatcttcttc gctttgctgt caaagatgaa agagtgaaac 
002341 ttgtggatgg aaagatggag attagtgagc ttcaatttgt tggaaagccg aatcgtgctc 
002401 gtgcttttgc tgacagccac tcgaaagtaa gtggccactt gagaatgcat ttttgctgag 
002461 aaaatatcat ctcattcatg ccttgtagcc aatggtttga tcgccttttg tatgttcagg 
002521 ctttgttcca gtacgctgct aggcatgctc ctctgagaat tgaggatctc gttgcctcga 
002581 ttcagtcaaa caatatggag cttgaatcta cggatgttga aatgcaaggt tgatgggagg 
002641 gaattaatga ttcgtcatca gatcagacaa ggaggataca tgtgctaatt ttactggatt 
002701 cagtaagaca tggacggtct ttatgcagga aaaggaacaa atgtaaagta gtagtatatg 
002761 catctgaaat tgttgttcca ggtttggatg gaatgggagc atgatagtat tagcttgatt 
002821 gggactatta cacatttatt tacaccccag attgtcttgc cttaaaccta accaaaccat 
002881 ttgctaactg tgctgctagc gtacggtaga atattgttcg gatcagattg tatagtacaa 
002941 gacatttctg gct

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ602401 rwhv3n11n21 808
more... (Total Hit Count: 4 )
/rice/oryzabase