cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK243646     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os01g0179600 ( IRGSP 1.0 )
RAP - Chromosome No. 1
RAP - Location, Length 4,152,077 -  4,153,674  ( - );   1,598(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 4,152,077 -  4,153,674 ( - );   1,598 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 MSU ID cDNA
Accession No		 RNA Nucleotide
Accession No		 RNA
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os01g0179600 Os01t0179600-01 J100088D24 303007 J100088D24 LOC_Os01g08440.1 AK243646 AK243646.1 116013011 BAH01690.1 215769461 NC_008394.4 297598437 NM_001048736.2 297596214 NP_001042201.2 297596215


Chromosome: 1 ,  position: 4,152,077 - 4,153,674 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 cactccacct cgagctctcg caatgccggc catggaggag gaggcggtgg ccaacgaggc 
000061 gcatcacttc ctcgtcgtca cgtaccccgc ccagggccac atcaacccgg cgcgccacct 
000121 cgcgcggcgc ctcgcgcgcg ccgcgccggg cgcccgcgtc accatctcca ccgccgtctc 
000181 cgcctgccgc aagatgttcg gcgacgccgc ggctgcgggc gccggcgggg agctcgtcga 
000241 cgaggggggt gtgcggtacg cgccgtactc cgacggctac gacgacggct tcgacagggc 
000301 ggtgcacgac agcgccagct acatgaccca ggtcagggtc gtcggcgcgc gcacgctcgc 
000361 cgccgtcatc gaggggttcc gcgccgccgg gaggcccgtc acccgcgtcg tctacacgct 
000421 gctgctcacc tgggtcgccg acgtcgcccg cgaccatggc gtccccgtcg cgctgtactg 
000481 gatccagccg gccgccgtgc tcgccgccta cttccactac ttccgtggca cgggcggcgt 
000541 cgacagggac atcgccgcgg cggcggcggc gcgggaccgg atggcgcccg tgcgcgtccc 
000601 ggggctcccg ccgctccggc tgcgcgacct cccgtcgttc ctcgccatcg ccgacgacga 
000661 cgacccctac gccttcgtgc tcgacgcgtt ccgcgacatc gtcgccgtgc tcagccgcgg 
000721 cgacagaccc accgtgctcg ccaacacgtt cgacgccatg gagcccgagg ccgtggcgtc 
000781 gctgcggcag cacggcgtcg acgtcgtccc cgtcgggccg gtgctctcct tcctcgacgc 
000841 cgccaagagc ggcggcggcg gcggcgccat caccaccacc accagcaacg acctcttcaa 
000901 gcagaacgac acgggctacc tcgagtggct cgacgcgcgg ccggccggct cggtggtgta 
000961 catctccttc gggagcctgt cgacgatgag ccggcggcag atcgccgagg tgtcccgcgg 
001021 catggcggcg agcggccggc cgttcttgtg ggtgctgagg aaggacaacc gcggcgaggc 
001081 tgacgacgtc gccatcgacg gcggcgtggt ggtggagtgg tgcgaccagg tgagggtgct 
001141 cgggcacccg gcggtggggt gcttcgtgac gcactgcggg tggaactcga cgctggaggc 
001201 ggtggcgagc ggcgtgccgg cggtgtgcgt gccgcagtgg acggaccagg gcaccaacgc 
001261 gtggctcgtc gccgagcggc tcggcgccgg cgtcagggcc gccgtgagcg aggtcgacgg 
001321 cgtgctggag gccggcgagc tgaggcggtg catcgacgcc gccacgtcgg aggcggtgcg 
001381 cgccagcgcg gcggcgtgga gagagaaggc gcgggcggcg gtggccgacg gcggctcgtc 
001441 ggagaagaac ctgcaggcgt acgttgggaa gattcgcgcc aattagatgt gtcttattgg 
001501 attttgaatt gggatgatgc tccaatttta tatgtaatta gccgaatttc ctatgtaatt 
001561 gtggaaatat atgctaatgc atatttgtat ttcatttt

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BY847530 bart44a10 546
more... (Total Hit Count: 5 )
/rice/oryzabase