cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK242908     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os01g0846450 ( IRGSP 1.0 )
RAP - Chromosome No. 1
RAP - Location, Length 38,082,754 -  38,088,216  ( + ) ;   5,463(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 38,082,754 -  38,083,031 ( + ) ;   278 (bp)
Exon 2 Location 38,084,156 -  38,084,312 ( + ) ;   157 (bp)
Exon 3 Location 38,085,032 -  38,085,187 ( + ) ;   156 (bp)
Exon 4 Location 38,085,506 -  38,085,684 ( + ) ;   179 (bp)
Exon 5 Location 38,085,770 -  38,086,008 ( + ) ;   239 (bp)
Exon 6 Location 38,086,094 -  38,086,224 ( + ) ;   131 (bp)
Exon 7 Location 38,086,875 -  38,086,982 ( + ) ;   108 (bp)
Exon 8 Location 38,087,077 -  38,088,216 ( + ) ;   1,140 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No
KOME
Clone ID
KOME
Clone Name
MSU ID cDNA
Accession No
Os01g0846450 Os01t0846450-01 J090082L19 302269 J090082L19 LOC_Os01g62780.1 AK242908


Chromosome: 1 ,  position: 38,082,754 - 38,088,216 bp

   Now loading


#
#
Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 gtttttactt gcttccccca tcggtctccc tctggcgcgc cgctttggct tttccgaaag 
000061 gaagccagtc atccatctcc cccgatttaa cccgacgccg tgccgctagt ctgatccgcc 
000121 accgccacgg tctcctcctc gcccccgtgc ctccgcctcc tcctcctccc gtccagcccg 
000181 tatcgacgag accagcaagg cgccgccgcg cgcggagctc tcgacgcccg ccgacgaccc 
000241 gcccgccgtc agatccgcct gctgcatgct tcctccaggt ttagatcgtt tccaaaaatc 
000301 ctctgcttct cttcagtaat tccacccgcg tacggggttt ctcgatcaga gcgggggttc 
000361 cgtttatgat cgggtcaggg tttacctatt ccttgtgatt tgggcggcat gcgatttttg 
000421 gattataggt gacgtttgga ggatatgtaa tattatgggt tttcaggaaa tcgtttggat 
000481 gctgtagtta ccaaccaccg cagcatgcct agcaatttgt gcaattactc gttactctta 
000541 acagcactca cgctgtcacg cgcggtgtgg cacactgtca aaatttgaga tacgttgaca 
000601 cttcatcatt ggtggaatct cgtgaaggaa ttatttcagc ggatgtgcat atgctatagt 
000661 atgagaacat ctatggtatt atgtagatac aacaatcact aaccagtcac gagaagaagg 
000721 tttttagttg tgattctata atatatttga gaatcaaaac taactttaca agcttatgtg 
000781 ggtttgaccc ttcaaaattt cttggagttt tttatagttc aacaagcgtc aatgattgcg 
000841 attcatatat atacattgtt tactagtaat ggtttgtgtg agttcttgag acaaaaatat 
000901 gtggttgacc acgcaccaaa tgcattgttc caccactgct tttggttgtg atcattttcg 
000961 catagatagc gtcatgtcat gctgcatttt gatggtgatg ttgtgattcg tgaatgcaag 
001021 caaaataaac gcaatggaaa catttttttt gcaagtcata ttttttgttt gtttctagtt 
001081 ctcatcgtta tcttctttta ataaatgtgt ccctttgttc tcttagagca ttttcccctc 
001141 tcagaaaatt ggaaacattt aataagcatc agagtgatca atcttagtga atacttaata 
001201 gagaacataa ttccatcaat gttctgttca gagcaaattt gtagaaaaga aaaccaggca 
001261 agcattgacc ttctgacttg tggttagaaa aattatctgg ttgaatctcc attctctttg 
001321 tttttaacag tatttttatt tgtacccatg taacatcttg tttttccttt ttggtccatt 
001381 atatttcgtt gttgaactgc aggatttcag tatgactgaa catataaatt atgatgtggt 
001441 ggagcagtgt gttaaaaaca tcctctctct aatcaaacca gtggaggatg acagacgcaa 
001501 acgactatct gcaattcagg agttatcaaa ttccattcct aaagttgcag ccttaagagg 
001561 tgagttatct catatttgat aatttttaag tttgtaacaa tgtaattttt gataagctaa 
001621 atatgaaatg caatggccac tgtggacagt tatggtcagt tatccttttg gcacctacag 
001681 ctgaggccct tggtcacttc tcttgtgatt tgttgctaga atggtgggaa cgggcaacaa 
001741 gtagaatatc taagaaacaa tgtcttccag tgatagcaga taggcctgca ggctgcagaa 
001801 ggtggtcaca agttgtcggc gaatacagat ctaggcgact taagtttagt ctcacgcatt 
001861 gcattctttt cagtagctgt cagtttcgta ttagggagaa tcctccagtt gtttgttgcc 
001921 ttttttttcc tttttgcttc taattatctg catcatttga tctctcaagc ctttttgcat 
001981 gctgctaaaa agaaaataaa ggcaatggtg accagtgttc agtttatttt ttcactacag 
002041 tcctaatgct gcataatgtg gaactattag gtgtttgttt tgctataatg gggtcatgat 
002101 ctcttcaaat ggtatagatt gttcaataac ttattttcct tcatatactt gcttagtcaa 
002161 tgcacaggtt ctctaataag tttccatgat ggcaaaatga aatgtcaaag gatttaatga 
002221 tgatatgatg gtggtgattt agtgttgcct tatctgaact tttaaatttc tttaacaggt 
002281 gctgttttca aaccttttgg atcctttgta tcaaatcttt actcaaattc aggtgatttg 
002341 gatatatcgg ttcacctccc taataactca atcataagca agaagaaaaa gcaatatgtc 
002401 ttgagggaat taatgagagt gctacaaaat agaggtaaac cttttttacc atattacata 
002461 ataaaggagc atgcagactt cttctcattg catgatcatt gtacccatga aataataacc 
002521 atggcttttg cggtaaaacc ataaaaggat tccatattat gcaaccacac atttacgcac 
002581 ataggatagc aaaatcatgt aggagtacta aatatgatga accgtgtatc tttatttcaa 
002641 aggagaattg gacttgaaat tcacaacctt gtgctactat attgggcaat tctttttagt 
002701 catacaggta gctcttattt atattatgat ttcgttggtt gaattgtgtc aggtgttgcc 
002761 ggatatgtgc aatttgttcc ttttgcaaga gttccagttc ttcagtatgt gagcaacacc 
002821 ttcggaattt cctgcgatat atctgtgaac aactaccctg gtcgaattaa atccaaaatc 
002881 ttctgctgga tcagttcttt agatgtgcgt tttggtgata tggttttact ggtaagacta 
002941 ggtaactagt agagagtttc ttgctgcccc atcattttgt tggaaagccc aaggttcaaa 
003001 ctatgttttc ttgcagatca aagaatgggc gaaagctcaa aacattaatg atcccaaaac 
003061 tgggacctta aactcctatt cactttgcct actagtcctc ttccattttc aggtaatatt 
003121 catctgtggt atttcaagtt atactgatac atgattttag gaatatcctt gttactgtct 
003181 ttaccttatt ccagacatgt gagcctgcaa tccttccacc tcttaaggag atttatgaag 
003241 ggaacattga agaaggtatt gctggtaaaa tgaactaata ttttctttga tgatgattgt 
003301 ctagcatatc tgtatctgaa ttcattgcat ttacatacag aaatgacggt gtatgatgag 
003361 gaacatcttg atgaggtttg ctctgaaaat ttagcaaaat ttcaaagcaa gaacaaggaa 
003421 cgaaggaatg aaagctctct ttgccatctg cttgcaacct ttttccacaa agtaattaaa 
003481 cagtatgctc cgtttcattg gtaaagttag tatgcttctt gtaaggacat atttgctgtt 
003541 catgtcttgg cgaagcatgt cttcatgttt ctaggaatat ttcctatgcc atattttagt 
003601 aagttatatc gaggttgctg gtgctcatgt agtttaataa gttgagttat ttcaaaagtc 
003661 tttggccctt gcttttgttc agcatcgtgg catcttgtta aactcaaaca taccttttct 
003721 ctttgtgttt tgtatttttt aaactaatta acacttgaca gactcttcct tttagagaag 
003781 taagacgatt tttgttataa ctcaactcat cttccatgct agcctttgtt ttgctcattt 
003841 tgttataagt ccaataagat gatttgtgtt caaatctaag ctaagtgaaa tagctactta 
003901 tcttcctttc attaaacata attaaacaaa tgagctaatc cctccttttt gtggggctac 
003961 ttaattactt tgctccatta aactatattt tatccccatt aaaataatgc tactgtcact 
004021 gaaagcatat ttaagattta gatgccatgc acatttttca ttcgttactt tttgtaactc 
004081 atgagatacg agctttacca gtaatcttac attgattgca gttttcctct atcggcaccc 
004141 tttcgggtga tgtgatatcc acttacacgg gccagttcaa acgaatagag gagaacccaa 
004201 gttggatggc cagatcatac agcttatttg taaggatttc cttttatggt tgcattcagc 
004261 agtcttattg aaatttggac tatttactaa cacaatctcg ttcgttcatt atctcctttt 
004321 caggtcaaag atccaattga gagacctgat aatgccgcta gagcggttga tttgaaaggc 
004381 cttgagcgga ttgctggggc cttcaccgct gctaatcgta agtttgcatc tctccaacac 
004441 gccaaacgaa atgacttact ggagatgctg tgtacgcctg ctgttggctc aaagcttggc 
004501 ataagagtta gccaagaagt tatggctaac tcttgcacaa atactccacg gaggaaccgt 
004561 catcatggta gaccaacgga acaagtctca gcgaggccat ctgataatca aaatcaccgc 
004621 ggggccagag aatttacagt tgggagacaa gttcataatc ccccacgggc gcgccaatca 
004681 actggagcgt accatgctct taacagtcag catgtaattc ctgcattgag ccaaccagca 
004741 ggaatttatc aaacagttgg cccataccag agtaatggtc atccacaggt gtatactaga 
004801 gatgtccaaa cagtagggca ccaaaattat aggcatccaa tgggacacaa cacacagctc 
004861 caaacagtgg aaccatatca gagtaataat agtcaaccac aggttcatgc taccagcatc 
004921 caagcaccaa gacaatacca gaattatact cgataacgcc cggccagaaa ctacaatcac 
004981 caagtgttac atgctacagc gaccgagaca acggccagaa actacaatca ccaattgtta 
005041 catgctgcag caaccgagac aacggccaga aactataatc accaatcgtt acatgctaca 
005101 gcaaccgaga cagaaggatc ataccggaat cagcagcaga gacaacacac atctggccgt 
005161 caaacaaata ggaacgctgt gaacacaagg tacgtgcctg ttgttggaag gccacaaaat 
005221 gtagcatgtg aatcacgagc tcaagactcc tcaggcaggg gaacatggca acaaagggag 
005281 ccgcgagcag gatcaaccta ccaaaataga tagcaacgga ttatcttcag cttttgcatc 
005341 gcagtgtgta tgagtttttg gtagtttgtg atagctttcg tcagccagca gtttgatctc 
005401 agtgccgctg caatgcagcg aactgtattg ggtaaaatgc agttacaaga ttttcttttg 
005461 tgc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK250477 FLbaf74f04 2546
more... (Total Hit Count: 2 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ809681 whsct9a23 395
more... (Total Hit Count: 2 )
/rice/oryzabase