cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK242339     Link to RAP-DB ( IRGSP 1.0 / Build5 )
RAP ID
RAP - Chromosome No. 1
RAP - Location, Length 1,983 -  9,815  ( - );   7,833(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 1,983 -  2,268 ( - );   286 (bp)
Exon 2 Location 2,354 -  2,616 ( - );   263 (bp)
Exon 3 Location 3,357 -  3,455 ( - );   99 (bp)
Exon 4 Location 4,457 -  4,560 ( - );   104 (bp)
Exon 5 Location 6,136 -  6,944 ( - );   809 (bp)
Exon 6 Location 7,028 -  7,150 ( - );   123 (bp)
Exon 7 Location 7,232 -  7,320 ( - );   89 (bp)
Exon 8 Location 7,408 -  7,608 ( - );   201 (bp)
Exon 9 Location 8,210 -  8,615 ( - );   406 (bp)
Exon 10 Location 9,102 -  9,187 ( - );   86 (bp)
Exon 11 Location 9,274 -  9,430 ( - );   157 (bp)
Exon 12 Location 9,504 -  9,815 ( - );   312 (bp)

Related Rice IDs
KOME
Clone ID
KOME
Clone Name
cDNA
Accession No
301700 J075199P03 AK242339


Chromosome: 1 ,  position: 1,983 - 9,815 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 gcagaattcc tccatttttt actgttctgt attgaaacga ctgcgtgatt accactagtg 
000061 ctttatacac attcctcatt cattccttct ctctccacca atagctgacg caaattgttt 
000121 ggcaaaaaga aaaaacaact agtactccac ttttatcaga aatcaccacg gaaagtgcca 
000181 aggcagatgg gctggcacca caaaaacaat gacaacatcg atcgatgcta caccaacatg 
000241 gcggtcttct ctattatcct tccaccgctt cgtctcttgt tttcaagtat actgtgcata 
000301 tgtacagatt ccctgaaaca agacaagcag attatgtacg tcatccatct ctaacaaaac 
000361 ataaacagaa agagggaatc cataccgtga gtatacggat tttttttgga cttctaatga 
000421 atatataaag ttccatcacc cataattacg agaagttcat ggttgaaaaa catctagttc 
000481 cccagggcga tttctcaact tcagtttcca ctttttcatc attccgagcc ccccttcaat 
000541 aactgtatcc caagaccaaa ttagaactta ccttgtaaat atacctgaaa aacatggatg 
000601 gtgctcatgt atgcttatca caatttacct tgtaaatata cttcttcctc agcttgatag 
000661 ccatgcgtac gcatcttttt acattgatct tcagcatatt atcattgaac atctatggaa 
000721 aaaattgacc aactcaactt caggagtgca aacaataaac atgcattaat atgccaataa 
000781 gttgcattat aagtaaacct gactatactt tccttaactc ttcccattta agtggaagac 
000841 tgctcagcag agtcaatatc accactatat acaggtttac ccatcttttt ttccaagagg 
000901 gagaaaggct gggcatcatt tttaattagc agttgccgta acttgtaaat attgatagtt 
000961 atcagaatga aataagcatc ctctaattaa acccatcaat tcagcagagg acaaaatcaa 
001021 tagtcattta tgcagaaatg atcggccata acatgttatt gtactgtctg agcaaatttt 
001081 taattttgcc taaaatgaat tccacaaaat ctaatgcaaa tataggtaac tcttggtagt 
001141 aatttcatgg atccgaggtt tgtaaacaat atgaaaggaa gttgtgactt aaacttgcct 
001201 tgattgcatc atctattgag cgagtttctc taattatctt gtggcgattg attacaagga 
001261 ttgctgctac gcagaatata ggcagatcat catctccatt ctttgctaac acatttgtgc 
001321 ttatatgtgg catctgctga tgtcttgccc aaatagtagc tcctgacaag ccacagaggg 
001381 gatttcttgt attgggtttc attccaaggt tgcaagctac acgcatttca ccatttctat 
001441 gatggggctt cctgcttttg gactttcttc ttgtgtaact gttcacccgg tgctcttctt 
001501 tcacctcaca tgataaatca ttcctcatat ctaccagcaa tggctccaga caattctctt 
001561 ccaaatgtaa aatcacatct tcattaaagt cagcagccca catcatctga aagcaagaag 
001621 cacggttggt taacagatca agactgcagt gtgaagagca ttttataagt aatgttccct 
001681 ccgatcataa atatttgatg tttagaacaa gatttggtca aaacttttga aactgaccat 
001741 caattttata tcagaataag actataaaat ctaataagtg tatcatatta tgacactaat 
001801 accttgcaag gcaaatctcc gcatatcttt ttttgtgttt ttataagcta cgcatttgag 
001861 ctgttattga cggtcaaaat tttaaaagtt tgaccacatc ttgtcctaaa cgtcaaatat 
001921 ttgtgacccg agggagtata aagttcacat gccacatgat atcacaaaca ttaactacaa 
001981 tcgtaatgaa ccatctacct acacctctga tgattttgaa cctaaatcga agatgtaccc 
002041 tattttacta tttgaaatat ttaactagta atacaatttt tgaaataaaa aaggcttaac 
002101 caacatcccc tagacctaca ccagctgaca aacaaacatc cattagagct ttcctacgaa 
002161 gaacaacaac tgaaaaaaga taatacatgt gtcttcaaat gccacacctc ccacatgcta 
002221 agtgactcct caaaggacag ctctcgacga aaaagcacta gcagcatccg gaaagcaaaa 
002281 tgaaggcttt cagcaccaat tgttgacaaa tgttcaaata attctacatc agttatttcc 
002341 atgatcttcc acaatgcttg caactgcttc ataactcctg ttggtccctc catctggaaa 
002401 ttttcacgct gaagtggaac agggcacata ttatgcatgg agtaacatag aaaccaaact 
002461 aataggcaac aaaatttgaa atatatgtga attaccatcc ttctcagtag catctcaaag 
002521 caccaaaagg catctgcatc atcctcatag agaacaacaa aaggtgaaag tagatcactc 
002581 atacctgtta gcaacttatc ccatttagac acatcaagaa accaaaaagg aagtaaaaaa 
002641 agatgccact gaaatatgca tataccttgg caatacccgg tggaaggatc aacccatgca 
002701 taaactgcaa gtatatctga catcctagcc atatttcttg attctccata gaaatcaaga 
002761 tgactatccg ttctaaccac atcaaccact gtaataggtt ttgcaaatta gaacataatc 
002821 acaagatacc actgtaattg catgatgaag tgaagaaaaa atagagcata ccaattcggt 
002881 gcagtgtcca aagccattca gagactcgat ctttgctggc aaccacactg ttggatttgg 
002941 ttccatcaac aaaatctgct tctggtgcat cagatatcct caaggaatct ataacttccc 
003001 tgttatagcc attatcatct aaccatctat cctgcttgta tgcatctgag tgaaagatgg 
003061 ctgaatcact gttgctagcc ctaaacacat cactggagca tgaatttgac tctataatga 
003121 gatctatgtt attattgatt tggaagctgt gcatacgttc atcacggtgc cttaatctat 
003181 cttcaggaac tgagaaacta caatgatttt tatcaactcc attgctgccc acaccatcag 
003241 ttgagaaaaa atttgtaaca ggtagagaag gataatcatc gaaggtctca gtgtcatatc 
003301 ttggttcacc catgtcattg taatcctgag aatcttttga gcaattattc acttctgtag 
003361 aagacacaat aaaattggaa gaatcataaa gagaggtatc attatgtacg ttgaaaccaa 
003421 ctagttcagc tgatttacta cagctttccc ttttttgtga ctgctgtgca ccaccggggc 
003481 cataatctga atcttctact aaactgccag ctgtattttg tgaagtttgt tgacttgtgc 
003541 taacttcttc tgcaatgtgg gtttcttttg acatagtcct gacatccatt agctttgatc 
003601 caacagcgta agcaagctca cctgtaccaa tgcttgggtg catgctctgg cactgtctaa 
003661 ctaaaatttg atatttttcc ctgcatagaa gcgaagaaat aaacgaggtt acaggcttcc 
003721 ataattgtcc cacaggtgta aaaactttca aaagaaagaa cactcagcaa gaatttcaga 
003781 actgtactga ttgccctgct ccgtagaaat ggaaacaaag gaataaaaac acttgtgcga 
003841 tggcatttca cggaattcgc attcatcagc aacaattagt agaatcggta acaaaggcaa 
003901 aacgtagaat ttctcgcaca acaattggta tggatggcat acatgatgtt ggttataaat 
003961 ttgttggtca caagtgaata aaacaagcag atgcaaacag aaaggactaa tcgcacgcca 
004021 atcaattcaa catgaacata tgacgtaata agtttatctg taatagcaca ggtacgcttc 
004081 gatagttaga cataaaaagg aatataaata tgcaattata attacagaga tcacaataaa 
004141 ctaaggtata tttgcattac taattagtgt gcaatgccaa cccatctact taatttcttt 
004201 aatacgcatc cttccattac aaagaaagag ccattggcac tgttggctac cacgtactac 
004261 agaatttaat gtcccaggtt caaaccccta tgaacaacat attttctgtc cagcacctgc 
004321 tagtgaatgg ataatgggtt tgtgaacagg ctgtttggaa ctgttaaatt tccaagagaa 
004381 ttctattctg gcaactagtc ttagaaattt tctgctccag gtttggtgga tcatatccaa 
004441 cccgatatca cccacaggcc atgaccacaa atacctagga attgtatgca atatctagaa 
004501 tctcagtctt tcatttacct ctaccctaga tgtattgata taatctgtca tattgttgtg 
004561 tgcaggcacg gggtacttat caagccatct aaaccaaatg gatcatacaa catcagcaca 
004621 agtagatgtt acatagacaa actatgagta ctgatgccac caattcatcc ccccaacaat 
004681 gtgtatagga ggtagcacaa tgaaaagggg taaaccctaa accctaatca agttactttg 
004741 agtgcctgaa aaagattgag attggtactc cagataaaca tagcaacaca tttgttttaa 
004801 acttttaata tcattttcca ttctgcacac atggttataa ataacacaag gaaaatgtaa 
004861 aggataggaa tatttaccta gaagttcagt tttagtacaa taaacaaaaa acaaacaaat 
004921 taatacctac tccctccttt ccaaaatata aagatttcta ggttgtttag ccaataccaa 
004981 ggttaggtca aaagattctt ttccctttct atgcatttga ttggtttggg aatcactgaa 
005041 atgatgggta ttatgggaat cagtgcagaa atccttatat tgtggtacaa aatttgaatc 
005101 cttgaaatcc ttatatattg gaatggaggg agtactacat aactgtaaca ttcatgattt 
005161 tattctagat aataaatgca attcatttat gctcttacgg tcttatgctt gtacaaaaaa 
005221 ggtatcctgg tactgaaaac aggaaagtgt caaaccttct aacagctctt agtttcctcc 
005281 tatactctga ggtactactc aaggcatagc agccaagaag aaattcccaa acttcagctc 
005341 gaatagtggg atccacaccc tgcacatcaa ttttgggggt aagaaatgtt ttaatgtgaa 
005401 gaatagtacg atgcgatctt attgttccta gtttatagac aattctttag atagtgccag 
005461 aacacaaaaa aatgatatct gtgcaaagca tgagttaggc acgatatgat aattttgatg 
005521 cattgcaaag catggagcac atctatcagt gccagtggtg tatagaaaat aacaacacta 
005581 atcactaatc aaggaaaata actacatgca ttaaacttag tctgctgcaa aaatgatcaa 
005641 taatccatgc ctaaaatata gacataatta aactaaaatc tgatgccttt tttttccaag 
005701 atatggccaa tgaactctga ttgaccttcc tataaagata ctaattgcaa agctgtggac 
005761 gtgtttgctg tggagaccgt gtcagtttgc tttcacgaaa caagacttga tagcagctca 
005821 ttccacatct ccactatatc taatttctat aaggttatac caaatggctt ttcagttagg 
005881 ggaaagctta tgtgaaggta tgttcaaatc ttgcttattt gaagcagtta tgtatttatg 
005941 taacttttat gtatttataa gcagtttcta cacattggat ttttttttgt atttacccac 
006001 aaacaaatgt ttatgcctag ctacatacac aggtaaaagg caaacactct gtgacataat 
006061 agtataaaga gcctagccgc ttattttttt aagaaaaact agagctacgc aatcatatgc 
006121 attaatttct ttgaaatttc caaagcagac actctcaaag agaacaatga tcatggtaat 
006181 aaaataaaca gttgtcacgt tctatttgat cttccctatt ttacacattc acaaatggcg 
006241 cgtggggcat catgctctaa aaggtaatgt attaagactg aaaaaaaaat ccacaccctt 
006301 caacagctaa aatacatgaa aaaacaagtt tttgaagcac aaaagaaaca attaactcac 
006361 ccctaagaca atgaatttta gggctttacg gaaacctatg acctttccat cattatcaaa 
006421 acatgtgtgc catttttccg gtttgagcat tttgctcccc tgcacaattc cagatggaaa 
006481 acaaggcgtc agttttgcaa ttctgcagaa aaatgtcgat atgaagtaaa ttgcatatag 
006541 aagacaatct catatactct ggtggataaa aggatatgat tagtgcaaat tagtcttctt 
006601 tcagtacaat atgtgagttg acctggaaat ttatttgaat ggattgaatg ggtaatattg 
006661 tataatcata gtgaatccag ggagtttgac ataatatctc cctaaaattc tctgcctgag 
006721 gctaccaatg aacatttgga ccagcataaa tagcattaag aagtatcaaa atggctaccc 
006781 cattgtgcag cctatgcagc atctagcctc gtgtgtgagc tcatatgttt tgcaaacatt 
006841 atcttcaaag cagcagtaca actgagcggt acaggatata catatgctaa atgttgattg 
006901 tatatgtata aaagtggcaa tagaaagtcc ctgggctgaa agtgttatct atacaacata 
006961 tgccaaatga caaataacag gacttataca gcttcacggt atgatgatga ataaataagt 
007021 gatgaagcag aatcatatac ggagtactag tatatatata ggatagagct agagaagcct 
007081 taatttagag agcaatggag atgtataatg agaagtgatg gaaaacaaat tgatggcata 
007141 gaatgtagac agctaatcga atccatatcc atatggagct agagtaggag taggcgaacc 
007201 ttaacggggg atgggttgag gcaggggtcg ccaatgtcac ggacgaggga gccaacgccg 
007261 cgctggaggt tggccatggc gccgcccgca cggccaccgg cgccgcacat ccacttgatg 
007321 tagtccccag cggtatctcc gttgtcttgg cccgcggccg acgacatctc cctcgccgtc 
007381 gaggagcagc tgattgctcc ctattggtat tggattaggg acagggaacg aagggagatt 
007441 gaaatctgat gatgcatgcg acctgaaaag caggcaatcg aattaaatca aatcaaatca 
007501 aatcaatcgg gggagggagt agggaatcga agggatggga tccctaccta ggaagcctac 
007561 ctagtcagct ggttgtggct ggcggcctgg tgggcgggga ggccatagct gcgtcgtgga 
007621 tccaaagctt cctcagcgag gactccttgg ttcaagggtt tgtctgcctg cctgcttctc 
007681 ttattcggta gtcttcaatc caactaccga atgggatggg gggattggac aggaggcatc 
007741 gatgtttctg tagctctctc cgccgtcgat catctccgcc tccgtcgtgt ttcctagtgg 
007801 ggaagtcgtc gtctcgtctt cttcattacc aac

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs  
Acc. No. Clone Name Length
BJ464843 bags36e12 579 view details
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ950894 whchul30a22 612
more... (Total Hit Count: 8 )
/rice/oryzabase