cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK242089     Link to RAP-DB ( IRGSP 1.0 / Build5 )
RAP ID Os01g0225550 ( IRGSP 1.0 / Build5 )
RAP - Chromosome No. 1
RAP - Location, Length 6,921,190 -  6,922,336  ( + ) ;   1,147(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 6,921,190 -  6,922,336 ( + ) ;   1,147 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No
KOME
Clone ID
KOME
Clone Name
cDNA
Accession No
Os01g0225550 Os01t0225550-01 J075140N08 301450 J075140N08 AK242089


Chromosome: 1 ,  position: 6,921,190 - 6,922,336 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 aagttctcgt acactcggcc cgtacgtgtg cacgatgccg atttagaaga cgtcggagag 
000061 ggtggggagc ttgagctcgc cggacttggt gagcggcagg gtgaagttgc cgaggatggg 
000121 gaggtcgacg gtgaggccga ccctcatctc gtagtcgatg tcccagtccc tgccggcgtc 
000181 cctggcgagg ctcaccagga agtcgtacgg caccttcacc gggatgtcca gccgcgtggt 
000241 gtcgccggcg gtgagcgacc ccgggtcggg catcgtcccc gacgccacct ccctcccggc 
000301 gctcttcagc gagtagctca cctcgcagat cgggatggag tgggagtagg ggttgcgcac 
000361 gtccacgcgc cccgcgaggg tggcgccgcc gcggcccacg ctctggaacg acagctcggc 
000421 cagctccgcc tccggcttct ccacccgcgc caccttgtcc gccacgaacc ccttcgcctt 
000481 gtccaccagc tgcgccattg tttcttgccc tgattctgat ttggttgatc gatcgctctc 
000541 ggttaatctg tcgtcgtcgc tgtactgtgt taggagtggg atcgctcgtc gtcgtacgtg 
000601 ctaaatacag gcgagccgga gcttctggcg gccgacacgt ccgtggggtg cgtggtggaa 
000661 cgcgtgtcga cgctgcaggg ctccgtcgct aaccgctcga cgagtgtact cgcgtcatca 
000721 gtttttcagt gtttttctcg cgagaagacg acttctgctt ggacagttgg agcgtctcgt 
000781 ggaagaaaat tacataggac tgaagtccta cactcatcta aaggacttcg tccccttacg 
000841 tgacaagtgt ccattacgaa tctcaaagag acaacctctc tcccctctaa tccccattct 
000901 tcttcctccg ctcggtgagg catccctcga acccgaccaa agcgggcgcg acggcgagtg 
000961 gcttcgggct catggatgac tgtcgggaga gtgcgacgat gacatcgtgc tcaactgccg 
001021 ctgccagtcg gcttgcatca tgtttgctgt agcgtgtgaa ctccgttggt ccgctccaca 
001081 atatgtattc gggagttgat gtacaccaag cctcttgatg agaaagcaga caacgatgtg 
001141 attttcc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BJ447771 baak17d19 544
more... (Total Hit Count: 10 )
Hit Wheat ESTs
Acc. No. Clone Name Length
BJ288006 whsl12e04 583
more... (Total Hit Count: 239 )
/rice/oryzabase