cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK241882     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os01g0293000 ( IRGSP 1.0 )
RAP - Chromosome No. 1
RAP - Location, Length 10,705,519 -  10,708,113  ( - );   2,595(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 10,705,519 -  10,706,967 ( - );   1,449 (bp)
Exon 2 Location 10,707,995 -  10,708,113 ( - );   119 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 MSU ID cDNA
Accession No		 RNA Nucleotide
Accession No		 RNA
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os01g0293000 Os01t0293000-01 301243 J065218P10 LOC_Os01g18860.1 AK241882 AK241882.1 116011247 BAH01138.1 215768909 NC_008394.4 297598437 NM_001049329.2 297596585 NP_001042794.1 115436072 Q9LGU6 METK3_ORYSJ
Os01g0293000 Os01t0293000-01 301243 J065218P10 LOC_Os01g18860.2 AK241882 AK241882.1 116011247 BAH01138.1 215768909 NC_008394.4 297598437 NM_001049329.2 297596585 NP_001042794.1 115436072 Q9LGU6 METK3_ORYSJ


Chromosome: 1 ,  position: 10,705,519 - 10,708,113 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gcggcgaaca aaccgggccg gatctctcct cactcctccg ccacctcaaa gctctccgtt 
000061 caaaccgtcc cgcgccgccg cggccgctgc aacccgcgcg cgcggactcc tgcctctcgg 
000121 tttgttcctc tttgcttctt cggttagatc gatagatcca gctatagtag tagttcagct 
000181 ccggtagatt tagattggag ttttttttaa tgtttttttt aattgttatt attatctgca 
000241 aagttcttgg gttgcgcgcg tgccctgcgg ccgttcttgt tgctatcgat cttactatga 
000301 actaaggggg aaggattagc gtttattttc cccgtcctag ataagtgtgg tagctaggtg 
000361 agtatgcggt ttgcaacaat taattggggg gagtgatttt acgaaaactg tcgcttgagg 
000421 aggtgtgtca tatttttagt tagtgttaat ttgtggtatt tttctctcta gtatggaggt 
000481 gacataagat gctggaacac aaatttcttt ttttttaagg aaaaatgtgg cagtacatca 
000541 tcaggaatag taaaaattct ctgaactggg tcagtaacag ctcaactgta gcttttggtg 
000601 cgaataattt agcgaatcga attttttttc ttcgaatctt gtgctgtact cctgttaaga 
000661 acaaagctgc tgcgtgtcga tctatatgct tttgcgatgt ggggatgctg agttcgcatg 
000721 ttgcaacagt tgggggttga gtgcggtggt cattcttttg ttcctggaac ctttggcaat 
000781 cggcatcttg cccgacatgg actcatgttt ttcaggccaa gtccaggact tcagcaggat 
000841 ttgtctgatg cccagttgcc tacttcccac ttgggcactg tctatgtcat ggaaatatat 
000901 acttccattg ctgctacctg acactaatga gcaattcact agattaccaa ctgttattac 
000961 ttattagtag aatttaagaa actcattact acttgttaaa acgaagtttt cagctgtatt 
001021 ttaaggttgt gtagttggaa tcatttggga tgttcttttc ttaagttgaa cttatgggat 
001081 ctgaacaatt ttgcttgatg caaatttaag ttctgagata tgcaaaccat gtgctgcttt 
001141 gtgcaggtcg aaggagatgg ctgaggttga caccttcctc ttcacttccg agtccgtcaa 
001201 tgagggacac cctgacaagc tctgcgacca gatatccgat gcggtgcttg atgcgtgcct 
001261 tgctgaagac cctgaaagca aggttgcctg tgagacctgc accaagacca acatggtcat 
001321 ggtgtttggt gagatcacta ccaaggccaa tgttgactat gagaagatcg tcagggatac 
001381 ttgccgcggc atcggctttg tgtccaatga tgtaggcctt gatgctgaac actgtaaggt 
001441 gcttgtcaac attgagcagc aatcccctga catcgcacag ggtgtccatg ggcacttcac 
001501 caagcgccca gaggagattg gtgccggtga ccaggggcat atgtttggat atgcaaccga 
001561 tgagacccct gaattgatgc cactcagcca tgttcttgct accaagctcg gtgcccgtct 
001621 caccgaggtc cgcaagaacg gggcatgcgc atggctgagg cctgatggga agacgcaagt 
001681 gacagtggag taccagaacg acaatggcgc catggtccct ctccgcgtcc acaccgtgct 
001741 catctccacc cagcacgatg agaccgtgac caacgacgaa atcgcggctg acctgaagga 
001801 gcatgtcatc aagcctgtca tcccagagca gtaccttgat gagaagacca tcttccatct 
001861 caacccgtca ggtcgcttcg tcatcggtgg acctcatgga gatgcaggtc tcaccgggcg 
001921 caagatcatc atcgacacct acggtggctg gggagcacac ggtggtggcg cgttctccgg 
001981 caaggacccg accaaggttg accggagcgg agcctacatt gcaaggcagg cggccaagag 
002041 catcgttgcc aatggcctcg ctcgccgctg cattgtccag gtgtcgtatg ccattggcgt 
002101 gccggaaccg ctctcggtgt tcgtcgacac ttacggcacg ggcaagatcc ctgacaggga 
002161 gatcctcagg attgtcacgg agaacttcga tttcaggcca ggcatgatca tcatcaacct 
002221 cgacctgatg aggggtggca atggccgcta cctgaagacg gcggcttacg ggcacttcgg 
002281 gagggaggac cctgacttca cctgggaggt ggtgaaaccc ctcaagtggg aggagccttc 
002341 tgcataaaca aacacttgca gcctctaaaa ctgttttgga aatgtttcca ttgattttgg 
002401 agatgttttt atctacactt cagcctctga acttaatcag accgtcacta catgtatcta 
002461 ttttcactgc cttagtagca ggcaggtatg tttaaggtct tatgctgctt agtgttcttg 
002521 tgttaaagaa gcttgtgtgg tgagtggtgg aggggatgat gaaactataa agaaactgaa 
002581 gcctctcatt ggtcc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK251841 FLbaf133f18 1518
more... (Total Hit Count: 235 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ805650 whsct34p13 779
more... (Total Hit Count: 1515 )
/rice/oryzabase