cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK121362     Link to RAP-DB ( IRGSP 1.0 / Build5 )
RAP ID Os01g0100600 ( IRGSP 1.0 / Build5 )
RAP - Chromosome No. 1
RAP - Location, Length 21,841 -  25,892  ( + ) ;   4,052(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 21,841 -  22,281 ( + ) ;   441 (bp)
Exon 2 Location 22,572 -  22,847 ( + ) ;   276 (bp)
Exon 3 Location 22,962 -  23,033 ( + ) ;   72 (bp)
Exon 4 Location 23,492 -  23,577 ( + ) ;   86 (bp)
Exon 5 Location 24,445 -  24,519 ( + ) ;   75 (bp)
Exon 6 Location 24,883 -  25,892 ( + ) ;   1,010 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
Tigr ID cDNA
Accession No
RiceXPro
FeatureNum
Genomic Nucleotide
Accession No
Genomic
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
Os01g0100600 Os01t0100600-01 216081 J023124E16 21099 LOC_Os01g01050.1 AK121362 20208 AP008207.2 255672756 BAF03651.1 113531268 NC_008394.4 297598437 NM_001048272.1 115433957 NP_001041737.1 115433958
Os01g0100600 Os01t0100600-01 216081 J023124E16 21099 LOC_Os01g01050.2 AK121362 20208 AP008207.2 255672756 BAF03651.1 113531268 NC_008394.4 297598437 NM_001048272.1 115433957 NP_001041737.1 115433958


Chromosome: 1 ,  position: 21,841 - 25,892 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 acaagtcaca gggaggagtc gaaaagagtc aataccagcc gcgccaccgc tccctcgctg 
000061 acctgcccgt gttcgcccct ctcgccggcc gccgacccgc ccctgctgct caccgctcca 
000121 gcctccgctc atcccaagcc ttccaccaca accccccacc cctgctcgcc cgcgcaccca 
000181 gctcaccagc gcacccgtct ggggtctgcc tgccgcttct ccctcccgtg caggtgcagg 
000241 ggaagaggca aggagggcaa gaccggggcg cagtggggag tacggaggaa gctggtgcag 
000301 cgtgggagag agggagctgg aaaagaagga agaaaggggg gcagtacaag ggggacttgg 
000361 gaggaggaag aagggggaat attttgagta tatgatcaat ttcgccgtcc aatccagatg 
000421 tgcgccaacc aattcgctat ggtataattg ataataatga taccttcctt gttgtatcta 
000481 tctatctatc tatctatcta tctatctatc tatctatcta tctatctatc tatcgatttc 
000541 ttatctttct ttgctcatgc ctgacgatgt catgtcacag ctgctatgct atagcaatct 
000601 ccttacttca ggattatcat gtatgtaaat cactagtaaa tgtattacga gaatatatac 
000661 aattaagcat gtatcacatc gatgtaattg gcttagtaca ataaagcttt cattatctaa 
000721 aaaaattaca gttcttgtgt tgctctgtgc gaacgaaact ttaaactgga acaggttgag 
000781 gagctggctt cactcatcaa ggacaacctc tacagcaagc acctcgtcct ctctactgag 
000841 gaaaccctcg tcgggatcct acagaaccag taccacaact ctgacgatga cgaggatgag 
000901 gacgatatag tggcagcata ccgcgggaca aataggaata tcctagagct ccaacctgcc 
000961 agctcctatc aacgtcttct tttgcatcgc cttgccgaca tctacgggtg ctctttccaa 
001021 ttccattcga cctgcttcac ctaccctctt ctcaaatact aacttaactg gatagagtaa 
001081 tatttgcaac tactaatgtc ttgcttttgt gtcgctgcta ggtttgttca tgaatctgtt 
001141 ggtgaaggtg aagatcgaca cttagttctc cagcgctgcc ctgaaactgc catgtatgat 
001201 accaaaagtg accacacatc tctttgttat tgagtgtcgt cttatgtctc cctatgccct 
001261 catttcgctg tttcttatac tacaaacatg tacagtttaa tttccacctg catcattctt 
001321 caatgcaata gaaaaaaggg ttaatagaaa aacacattgt ttccacacaa aaaactgtct 
001381 tcagggaaat aaaacaaaag ctatcccgta aactcatgat cacatcttgt ttgttattcc 
001441 ttgccgtctt gctccaattg catccctagt tccacctgtg gcgaaccatt tggctgctca 
001501 cactttaaga taatcacgcc atttgcctcc catagctatt gtgttgactc agagcacgga 
001561 agctgaaatc acacttttct tgtgacctac acatgagaca ttattctgta gttctattac 
001621 ctctgattac ttattatttc atattgcgca gcccacctgt cctcgtaagc gacgtattat 
001681 gggagtatga caacaaagat acatcgacat ctgttgtagt gaagaggaaa gatacaggtg 
001741 aattgttata atttcatttt gtggatcatt catgatgaag cattttgatg gggtgacact 
001801 accctgtagc acccatgctg ccaattctgt ttgtgcttta gtaaatggtc catggagaag 
001861 attcgtgtgt acttatgatc cgttgttcgg cttgtccggg ctcaagaaaa tttctggatc 
001921 ctcctctgtt ttgttcccct acataaccac tgtattacct gaccaatata tttttttttc 
001981 tgaaaacaat cataatgccc tttactcata accctaagat accttcccta attaatgaaa 
002041 tgggtccata gcggatcaag aaaaactaaa aaaaagtatg ggaggataaa atgaagaatc 
002101 agggcacact agaaattctc ttcgcaaaaa aattatgaaa tgattcctct tgatggtagt 
002161 gaccaaatct ggaaatagga actaggaagt cattgtgcag tgccttagcc tgaatttatt 
002221 tcaccctctc ataaaaaggg attaaaaatg cacagtatgg tcgttgagca tgattcgcgt 
002281 gacaaaggag taaagctggc tgctggatgc cagctggaga aatactggta tttttttcca 
002341 tgtgagtttg aagtgggtag tcaatttgac ttacattttc atcgttccac aggcatagtt 
002401 tgatgtgtca taagacattc agttccatag atatcttctt gttattccct taaaaaagat 
002461 atttcttatt attctctcaa gaaattctaa gtgcaccatc tgcacaaaga aaaacctatt 
002521 ctacatgtat aaatgtgatg cactgtgcaa tcttatgtgt gtgtaacagg ttaataatta 
002581 gcattttgaa ttctcttcta acagatcttg aagaagcctg gaaggaagat gcccaagaaa 
002641 atatttctgc tgaaatctcg catttgaaaa atgatgcagg tacgttgcgc ttgctgtcca 
002701 cctctcaaca aagcgtcttt caaactgtct tagggtgtgt ttggaactcc aagttcccaa 
002761 ctccattgct ttgttttcgt acgcttttca aactgttaaa cgttgcgttt ttttgcaaaa 
002821 agtttctata caaagttgct tttaaaaatc atattgatcc aattttgaaa aaaatagcaa 
002881 atacttaatt aatcatgtac taatggaccg ctccgttttc cgtgccaact gtttgggatg 
002941 ggaaccggca tatgcgaacg cagccttaag cttggttctc tgcataattt cagtcgagga 
003001 atttaagtct gaaaaaaaac ccaatcaact cttttatttc agatttgaag gctttgcaaa 
003061 agtcagttgc acccccagca ccgtcactca aggagaggga agctgcttat cgagctgctc 
003121 gcgagcgtat cttctcagcg catgatgcca agggaaatgg gacagcagtg gcaaaaccta 
003181 ggcatgttcc tgctgttgct caacggatga tcgcgcatgc acttggcaaa aaagttgaga 
003241 gcccgacaga gacagcagcc gtgaagaatg gcaaaggaaa ggagccagcg gaaagtagta 
003301 ggaacaagtt aaacccacgc acagcaggtg gcaaggaaga tagcaggtat gttgagaatg 
003361 gcagaatgag gttgcacacc gggaatccat gtaagcagag ctggcgtaca agtaacagta 
003421 gagctgctag tagtgttagt cctgatgaac tgaagaggga gcaggttgga gcggcaaaga 
003481 ggatgtttgt gcatgccctg cggctgcctg gtgttgaagg aagtgatggt ccggtgcgga 
003541 aaggcaagta agagtcgagt tgagatggga ggtgtaatgt aggtattagg atggagtgaa 
003601 atggcaactc tgtgatgatt ttcatctggt gatactatgc tggtataaga tgagatggaa 
003661 ggcctggtat cccttggtgg aagaagttga agcgcaaaat gcaatgctgg ggatatgcaa 
003721 gtggaagaag ttgaagcgca aaatgcaatg ctgggggata tgcaagtgga agtggtgaga 
003781 gctagctgct tgccgatggc agcagttgtg gcaatattga gtgcaattga caggtctttg 
003841 tttgttttgt tttttttttt gccagaagct gcagtttagc aggtccttat tttcgtcaga 
003901 agttacaaag agagaatatg ccaattttta gctttatatt ttgctgaagg cagacaagtt 
003961 gtagaggaat atgctgatcc ttagaaagaa ctttgtgtag cctatttgga tggtttcaga 
004021 ctttcagtga tagagtcgga gcaatgttgg tc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs  
Acc. No. Clone Name Length
AK252823 FLbaf164p18 1753 view details
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ649377 whem16k08 636
more... (Total Hit Count: 6 )
/rice/oryzabase