Update info.cDNA ( Data source : RAP-DB )
cDNA Detail
jump to Other species ESTs data to homologous Rice cDNA
| General information | |
|---|---|
| RAP - Accession No. | AK120836 Link to RAP-DB ( IRGSP 1.0 ) |
| RAP ID | Os01g0218800 ( IRGSP 1.0 ) |
| RAP - Chromosome No. | 1 |
| RAP - Location, Length | 6,506,368 - 6,513,640 ( - ); 7,273(bp) |
| Exon (Data source : RAP-DB) | ||
|---|---|---|
| Exon 1 | Location | 6,506,368 - 6,506,790 ( - ); 423 (bp) |
| Exon 2 | Location | 6,506,919 - 6,507,019 ( - ); 101 (bp) |
| Exon 3 | Location | 6,507,110 - 6,507,184 ( - ); 75 (bp) |
| Exon 4 | Location | 6,507,359 - 6,507,445 ( - ); 87 (bp) |
| Exon 5 | Location | 6,507,593 - 6,507,682 ( - ); 90 (bp) |
| Exon 6 | Location | 6,507,759 - 6,507,815 ( - ); 57 (bp) |
| Exon 7 | Location | 6,507,906 - 6,507,992 ( - ); 87 (bp) |
| Exon 8 | Location | 6,508,585 - 6,508,783 ( - ); 199 (bp) |
| Exon 9 | Location | 6,509,113 - 6,509,177 ( - ); 65 (bp) |
| Exon 10 | Location | 6,509,502 - 6,509,606 ( - ); 105 (bp) |
| Exon 11 | Location | 6,509,726 - 6,509,871 ( - ); 146 (bp) |
| Exon 12 | Location | 6,510,100 - 6,510,224 ( - ); 125 (bp) |
| Exon 13 | Location | 6,510,335 - 6,510,437 ( - ); 103 (bp) |
| Exon 14 | Location | 6,510,521 - 6,510,596 ( - ); 76 (bp) |
| Exon 15 | Location | 6,510,734 - 6,510,869 ( - ); 136 (bp) |
| Exon 16 | Location | 6,511,298 - 6,511,387 ( - ); 90 (bp) |
| Exon 17 | Location | 6,511,484 - 6,511,578 ( - ); 95 (bp) |
| Exon 18 | Location | 6,511,698 - 6,511,763 ( - ); 66 (bp) |
| Exon 19 | Location | 6,511,868 - 6,511,936 ( - ); 69 (bp) |
| Exon 20 | Location | 6,512,034 - 6,512,147 ( - ); 114 (bp) |
| Exon 21 | Location | 6,512,241 - 6,512,448 ( - ); 208 (bp) |
| Exon 22 | Location | 6,512,545 - 6,512,600 ( - ); 56 (bp) |
| Exon 23 | Location | 6,512,818 - 6,513,640 ( - ); 823 (bp) |
Chromosome: 1 , position: 6,506,368 - 6,513,640 bp |
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| Sequence (Data source : RAP-DB) | |
|---|---|
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Nucleotide
Fasta Format |
000001 gaaccctaac acgcggagga tttggccacc gacgagttgg ggggaggaag ggagttcaat 000061 tctagggttt tgtttcggcg cggcggggat gctcgcgtcc cgcatcccgc tcaagcgctg 000121 caccgccgcc gccgtcgtcc ccctccccgg ggagttggag atggaggagg ggcccacccc 000181 ccccgccggg ggtggtgagg ggagcggcgc ggcggtggtg cccgccaagc gccgccgcga 000241 gcgggtggtc ccctcgcggt ttagggactc ggtggtgtcg ctgccgctgc cgcccgcgaa 000301 gaaggggagg cccgcgaaga aggcggccgc gcgggagggc ggggacgggg aggtgtacga 000361 tgtggaggtg cgcgcggtgg agcaacaagg cgcgacggcg gcggccttcg gcgccgtgga 000421 gaccgcggtg tggcccggcg acgagcggcc ggcgcagacg gaggaggagc tgtaccgggc 000481 gtgcaggaat atccgcagga gcagcagctc cagcgggttc agcggcagcg tggtgacgtc 000541 gctgagcaat gccggcggga gcgtggcgcc ggaggggaag cccgtggtgg tggtggagtg 000601 caagccgaag agggagggcg gcgataaaaa ggaggatttt tactggccgg aggatttcgt 000661 gctgggtgat gtcgtgtggg cgaggtccgg gaagaagtgc ccagcatggc ctgcggtggt 000721 gattgaccca ctgctccacg cgccagcggt cgtgttgaac tcctgcatcc cgggtgcact 000781 ctgcgtcatg ttctttggat tctcttctgg cgggcatggc agggtaagct ttgtggggtg 000841 ttggtttttg ttttgtcctt gaaatccaca acccaacatt taaatgtgat tttttttttg 000901 aatttaaatg tggaataaga gttccacgaa gtgcaactga aacagggtaa accatgtgtc 000961 gcatgggcca aacagtccct ttctgttttt ttttttttgg tttgcgtcaa cttacagtac 001021 tgtatttctt tgcatcgcag gactatggat ggattaagca agggatgatc tttccatttg 001081 tggactactt agaccggtaa gctactggca tacgttcgtt tttttttaaa aaaaatgctg 001141 ctatggggat ttatttacct gcgtgctatc tgaaatttct ttggtctccc aggtttcagg 001201 gtcaggcttt gtataaactc aaggcaaaca gattccgtca agcaattgag gaggctttcc 001261 ttgctgagcg tgggttttgt gagctcgaaa tggatgaggg gtgctcacta gagaagtctg 001321 tcaatgacca gtctgtccct gacgggttac aggaagggag tggttctaac aatgaccagg 001381 aatgtcaatc ggaggctcag gtaagttccg gatgcatcac aaatgtaaag atatgagctt 001441 gtgactgcct tattacaact ttcagctgag ccgcaatcta atcaacactg caggttgttg 001501 gcaaatcaac tggatgttgt gatagttgtg gtaatcgtgt tccacccaag atcgcgaaga 001561 aaaagaagca agcgggagag cagttactct gtagacactg tgataaggta tgcggccgta 001621 catttgagat gggtttttgt gtgttccatt actgttttct gtttttatgg tgccttatgt 001681 gtgcaaattt tattatatct gcagctattg cagtcaaagc agtactgtgg catatgcaag 001741 aaaatctggc accacacaga tggtggaaat tgggtaagag cttagaaata tatgtgtttc 001801 gtcgctgtta tattctacat gttctcttga tttgtccatg ggtcaaggct cacaacctgc 001861 aacacccttc tttgcaggtt tgttgtgatg agtgtcaaat ttgggttcac gtagaatgtg 001921 acctaacatg catcaacatg gaggtaatct gcttcttttg ttttgatgtt tatatttttt 001981 atcctattgt ttgacacaga tatcgaacag ttctacgaat aataactgta tataatttgc 002041 tgactccagt actgttttat aggacttaga aaatgccgat tacttctgtc cagattgcaa 002101 atcaaaacgc aagacagtac ctcctgttga acaaatgaac actccgaaca gttcagagtg 002161 agttatttaa ttttttcatc caacctattg acttctattt aacgttactc aaatgattat 002221 aagcatgcca ctttctaatg tatctataca cagatgtgct agcacttcta aggaaaaact 002281 gccggaaatg atacctgtgt tctgctttgg gatggacgga atgtatttac ctaagaagca 002341 catgtatgta ttctgcatat cttctattta atctacagcc agcatgcttc tttaagctta 002401 ttacatggat atcaatactc tttaagtgat tttagcgtgt tttatttctc aatcccccat 002461 atcatgtaga gtcatatgtt ctttgaagga ctactagatt taggtgatag gttattttcc 002521 taggggcata tatttctctt ttgtttcatt catctggcat gaaaattgac acttaaccaa 002581 tttagccata ttggatattt tgtgccacaa ggcttagaag gctcaataag aaaaacaaca 002641 tttgaaaggt cgattgttca atattaaaga aattcatgta ttcctttctt tctaaaggac 002701 tataaactga tttcctgatg tggctgtggc tggtgcaact gttggtattg actttgtatt 002761 gttattggca ggatactatg ccaatgtaat tcttgcaaag aaaggctgat gagtctgagt 002821 gagtgggaga gacatactgg ttcaaggaag aagaactgga agatgagcgt taaacttaag 002881 agcaatgggg atccattggt aaccttggta agcctttaag atcttcattt atctgaaagt 002941 tggtggtcta taatgatcgc taaacttgaa ttcacctagt tttcaataaa attcaaaggt 003001 atgagaactt gatatgactt ctttcatgtt tgtctgacct tcagttggat gatattccct 003061 gcgcaaatgt gaagtcttct acaccaagta ttaataaaga agagttgctg aaattgctag 003121 gtacattggc tcttgagttt atgttggttt ctgcagttgg tgtgtgcaac ttgtttcaca 003181 acaaatgaat ttgatgcttg cagcaaattc ttttagacct gtcaatgcta gatggacaac 003241 tgaacgttgt gctgtttgtc gatgggttga ggattgggac tacaataaaa ttattatttg 003301 caacaggtat ttcctgctaa tctttgaggt ttttttgaca cccttagttt atggattcat 003361 tatatgtttt aggactgcgt gtagctgaaa aacttgtcca aaatctttat gtgcagatgc 003421 caaatagctg tccaccaaga gtgctatgga gcacgtgatg tacaagattt tacaaattgg 003481 gtctgtcgag catgtgaatt gccgaaacaa aaaagagaat gttgtctttg tcctgtcaaa 003541 ggtatcattc ctgccatgat gttgtatgtc atcacagtat tgaatgatac tgatacctca 003601 catttttttc tgaggctttc cagtgttcct tatattatgt ttatatgatg taccccattt 003661 gattaaattg cagtggtgct tggtgtccat ttttcctagt cttggttcgc tgcattatat 003721 tattttttaa tgctatcagt attcaccttt tcttttttaa ttgctttagg cggtgctctc 003781 aagccaacag atattgacca actatgggtt catgttacat gtgcctggtt tcaacctaaa 003841 gtctcttttc ctgttgatga gacaatggag ccagccatgg gcatattgag catcccttca 003901 gagtacttta agaaggttaa gatttctcat tgttattttg tatataatgt tatgcattgg 003961 atatttattg tctgtttatt tgttgaattc ctgtcgtgat gtttatttac actatgttgt 004021 catatgaatt ccaggcatgt gttatatgca agcagatgca tggtgcctgc actcagtgct 004081 acaagtgctc tacttattat catgcaatgt gtgcatcaag agcaggatat cgcatggagg 004141 tagactgtgg gaaccctttt cttgcttaaa taaaaaataa attcattttg tgacttacga 004201 gtcttatgat gcttgtctgg gagagttttg tgcacttgta ctcgcccgct tggtttttga 004261 attgattctg tgtactgttg ctttgaagag cgcaagcctt atgcttcatt tttccatata 004321 agctattcca ttgaagcgtg acctgtacat ttgtttaaaa tttattctgt atcatttgat 004381 gttaatttat tagtcaattg tttcttcatt aatgcacagc tggatacagt ttatcataat 004441 cgatgttttt ctgttgcttg tagttgcaat actctgaaaa aaatggaagg aacataacaa 004501 gaatggtttc ctactgtgca tttcacaggt aatttttttt caccttactg tctcaccctc 004561 tgttcaaata tatatcaatt catcaaattg tttccattaa aaataatagt tccaatatag 004621 gctcatgagt catgactctt attttccaga ccttgttctt tctttttgtt gttcatctta 004681 gtagcatagc gatacattct tttttgagca aaatcaatag taatctgatg cattaaattg 004741 acaagatatt ggaacagttc tgttgtctca gttatttgtg ggagtggcaa ttctacctta 004801 aaggattaag tggcacaaat tcgtgttact tacacctgtt ctactgaccc tttgcagtac 004861 tcctgaccca gataatgtct tgatagttaa gacgcctgaa ggagttttct caaccaaatt 004921 tttgccccaa aataatgaga aacagagtgg tacaagactt gtcaggaaag agaatctaca 004981 ggagaaagtc cttcctgcta aaatttctga ctgtccagct gcaaggtgcc taccttatga 005041 aatgctgaaa aataaggtat tttatgacgc ccctattctg ttttgttctg ttgctcctcc 005101 caacagtagc agagccagga attttaccct gtggggtcaa ataccattgc attatatttt 005161 agtgggggtc atttttgtaa atttcaatgg acttatatgt aaaaaaatga gactcacaat 005221 ggtatttgca aaaaaagctg tggcgtcagc tgacaataca tggctccgtc actgcctccc 005281 aatacaataa aagatatagt taattggcag ggataattca cgaatttgtt acactgtcca 005341 ctttcatttt gtaattcttt gtagcccatc ctttagactt tttatgttct ttctcctttt 005401 ggtagtttcc tttttagttt atgtaaaatt cttagttcat ccaagcaatt tagattcttg 005461 tctgcatggg tttctcatgc tgtaatctat ccttggtttt gcatgttcaa aggatgggac 005521 tcttagtggc agttatatac agttcttttg gaataatagg atgtctatca tatggatgaa 005581 tatggatctg cctaggtttt gtttctgtta taagctagct ctagcactaa attttctgca 005641 tgttccagaa agaaccagga gaggcaattg cccacagaat aatgggaccc cgacatcatt 005701 cccaagagtc aattgagggt ttgaacgctt gcatggtaac tatcccattc taactactgt 005761 attgtctttc ttccagcaac cattgaatgc gagaacttat gcatcttacc cccacttgtt 005821 aacaggatca aaaggatgaa aaatccttcg caacttttag agaacgactt cggtatttac 005881 aggtttagtt tctgacggat tgttcttttt aatatttgat ttcagcatac tgatacacta 005941 aatgtttgat gatttcagaa aatagaaaac aaaagggtct cttgtggtcg atctggaata 006001 catggatggg gactctttgc tgctaagaaa atccaggagg ggcaaatggt atgccattta 006061 agttatatgc attttttcca ataaaaccca atagtttatc atggtaaata gttagcattc 006121 cagttctgtt gtttgttgtg catccaaata ctaggagcct gttcttaaca tgtcaatgga 006181 ccacttttgt gctaggttat cgaatatcgc ggtgaccaag ttagacgtag tgttgcagat 006241 ttgagggaag cacgatatca cagggagaag aaagattgtt atgtaagttg ttcactgtgt 006301 tattttgtgg aggtcatctg ttctactttt gacttgaatt atttaggcag ttctacctgt 006361 gaataatgca atgatttcca gataggtcac tgatctactg gaaataccac atcttaacta 006421 tgtgtgatgg tgatgattct ttcttttgca ctgcagctgt tcaagatcag cgaagacgtt 006481 gtcgttgatg caacagagaa agggaacata gcccgcctaa ttaatcactc ggtaatactt 006541 tgggtttccc atttgcatct tctctctacc ttaatagccc aacaaaatat aacagctaaa 006601 cattatcgtc atcgctttca gtgtatgcct aattgctacg caaggatcat gagtgttggc 006661 gatgaaaaga gccagataat tcttatcgcc aaaagagacg tctccgctgg cgaagaacta 006721 acgtaatttg ctccttaccc tgccctgtcc tgatgcccct tttatacctt gagagtacag 006781 ctaactgtct ccattcctga agctatggat ctctacaatt ttctgatccg tctctccctc 006841 ttgtgtgcag ctatgactac ttgtttgacc ctgacgagtc cgaggactgc agggtccctt 006901 gtctgtgtaa agctcttaac tgccgtggat acatgaactg aagtgaacat tctcacaagt 006961 cacaaggcta acccccctta accatgccaa agggctatat tctcagattc atcatgattc 007021 tttcgtttat tcaaaggctg gttgtcaaac aagcatcaaa gtttgtgatt tttttacaca 007081 aattttgcta gatagcgagg ctggattgga tttaccggtt tcagactttc ggtgagagca 007141 tagcaggcac ctggcaattt agcaacacgc tgccagagcc ccttgtaaat tcttcttact 007201 ttgatgtaat aataagatga ttaagttgtt aatgcctttt ctccatgatg aaaagaaaga 007261 gaaatgaata tcc |
Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.
| Hit Wheat ESTs | ||
|---|---|---|
| Acc. No. | Clone Name | Length |
| BJ276913 | rwhoh27b20 | 745 |
| more... (Total Hit Count: 2 ) | ||
