cDNA ( Data source : RAP-DB )
cDNA Detail
jump to Other species ESTs data to homologous Rice cDNA
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General information
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RAP - Accession No.
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AK120431
Link to RAP-DB
(
IRGSP 1.0
)
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RAP ID
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Os01g0536000
(
IRGSP 1.0
)
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RAP - Chromosome No.
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1
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RAP - Location, Length
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21,099,942 -
21,108,270
( - );
8,329(bp)
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Exon (Data source : RAP-DB)
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Exon 1
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Location |
21,099,942 -
21,100,224
( - );
283 (bp)
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Exon 2
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Location |
21,100,330 -
21,100,447
( - );
118 (bp)
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Exon 3
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Location |
21,100,959 -
21,101,033
( - );
75 (bp)
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Exon 4
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Location |
21,101,133 -
21,101,189
( - );
57 (bp)
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Exon 5
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Location |
21,102,055 -
21,102,171
( - );
117 (bp)
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Exon 6
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Location |
21,102,713 -
21,102,826
( - );
114 (bp)
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Exon 7
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Location |
21,103,145 -
21,103,267
( - );
123 (bp)
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Exon 8
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Location |
21,103,416 -
21,103,505
( - );
90 (bp)
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Exon 9
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Location |
21,104,335 -
21,104,460
( - );
126 (bp)
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Exon 10
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Location |
21,106,512 -
21,106,565
( - );
54 (bp)
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Exon 11
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Location |
21,106,638 -
21,106,712
( - );
75 (bp)
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Exon 12
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Location |
21,106,792 -
21,106,899
( - );
108 (bp)
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Exon 13
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Location |
21,107,126 -
21,107,197
( - );
72 (bp)
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Exon 14
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Location |
21,107,308 -
21,107,370
( - );
63 (bp)
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Exon 15
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Location |
21,107,945 -
21,108,270
( - );
326 (bp)
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Chromosome: 1
, position: 21,099,942
- 21,108,270
bp
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Now loading
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Sequence (Data source : RAP-DB)
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Nucleotide
Fasta Format
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000001 atcccccatc tcaatggcga tgtcgagctg agcaccaccc tagcggtgga gtaggggagc
000061 tgtggtcggc ggcggccgcc gccagttggg tgtctcggag tgagaccggg agaggcggcg
000121 gagggagctc agggagggag ggaggagggg cggcgatggt gggcggaggg gcgctgcggc
000181 gggtggggaa gtacgaggtg gggcggacga tcggggaggg gacgttcgcc aaggtgaagt
000241 tcgcgcagaa cacggagagc ggggagagcg tcgccatgaa ggtggtcgac cgctcctcca
000301 tcctcaagca caagatggcg gatcaggtga gcccccatct atctcttctg tttttttttc
000361 ctttttttgt tctctctatt tgcgtgttga tcaagagatt ttgctgtact agcttagctt
000421 gggaattaat tagtgtatgc cacggatttg tctagcgcct tgagacacag aatggatgag
000481 ggagattgtt taattcgacc ctcttttcat cctcttttgc gccaaattct actcggtttg
000541 tcaatggtgg gtttgatgct tcatgtccaa ttggcgtcta gcttgcagct tcctttcccc
000601 acaacaaagt gttaacagtg gtggtaccag gattgttgaa tcgaatcgca attttaaact
000661 tccgccgagc agtttgttct tctgtatata cctattaaga tattgttgtt ataaaagaaa
000721 aaaaaaagta aggtacctat gtcaagaagc acccctttgt aaaaaagaac tcacaggttt
000781 atgcttgtaa gggaaaggca gttttagctg ttctagtttt gtgttgttga gctgcgtaag
000841 ttagctgaat cctgatgtat cagggtgata aaacaggagc ttacttaatt atttctgcag
000901 attaagagag agatatctat aatgaagctt gtgaggcatc cgaatgtggt tagactacac
000961 gaagtacacc ctctttccct tttctctctt taagttttgt tgtttacttc tttgttctct
001021 cttgcttttt ccaagtgctg attgggtgat catatctgtt ctgttatgtg caggtcttgg
001081 caagccggaa gaagatattt ataatcttgg agttcatcac tggcggtgaa ctatttgata
001141 aaatagtaag gccctgcttg ttaatgataa gtgtcctttt cagtgtcatt ttctcgatat
001201 gacctatgaa aaaattgaag ttaaattagt tcttgtatct gttgcctagt tgtctacctc
001261 attacttctg gattgaacaa tcgccacttg tgcttgttgg atttaacaca caaaaatgag
001321 ttttcaaatc tatgttgaag cttagttatt ctgggaacaa tgccatttca gattcgtcat
001381 ggaagactca atgaagctga tgcacgcaga tactttcagc agctcattga tggtgttgat
001441 ttttgtcaca gcaaaggtgt ctaccatcga gatttaaagg tgataagtca aaagaaaaat
001501 acgaaaactt tttgtgttta gtttgtgggc tttttgattt tattttgtat gtatgcagcc
001561 cgaaaatctc ctccttgatt cccaaggaaa tcttaaaata tcagactttg gactcagcgc
001621 ctggcctgct caggtccata cctttctgaa ggcttgtcca atattcatat ccttttgtcg
001681 agttatttag tttgttcttg tgcagggtgg tgccctttta cgtactacct gtggaacccc
001741 aaattatgtt gccccagagg tgagtgacat ctgaatcaca tgctttgctt tgagttttcc
001801 tagatagaaa acattaaaat tgtcttctgc aacaaagggt ggtttaaata tgggttaatt
001861 ggatccatgc cactgcaact ttgccaaatt gaaaaaatgc cactactatt catcatatcg
001921 gctacatgcc actcgaaatt tctaaaattg gaaccatgcc actccagtca gtttttccgt
001981 cctcctctct cacgccgtct ctattcccgt cattatcccc cctcccttcc catcctcctg
002041 ctcctaggtg gccggggaca gcaccaccac cttcgtcgtc ctcaccggcg caagggtcgg
002101 cggcgccggt gcacgaagac gaggctggcc tgtggttccc gttcgcggac tcgctggaga
002161 aggacatctt ctcggacctc ttctacgagg cgcccgtcgc ggcggcggca acggctgcgg
002221 ctgctggcct aggcgccgat ggcgacagcg acggcgaagg caagccttgc aaggacgatg
002281 cggcaatggc ggaggagcgt ggcgggccgg gcgcggcgcg acctgatgcc gccgcccaag
002341 tcgacgcccc tcttctcttt attccccact tctctccacc acgtccatga tgttagccgt
002401 cgcgccgggg aacgggttgc cggcacggag gttgttgtcg gcgtccatca ccctgtacac
002461 caccttgtgc gtcggcttgc cgtgctcgtc cacgccattc tctgcaaaga tttcacgtat
002521 ctcactgtca atttgacaaa tgaactcatc caatccagcg acagcaacat ctgtatggat
002581 ttaacaagaa tggaccaagc aagatcgaag cagtcggcgg cttggcgccg cgggggctgc
002641 ccatgccaag ggcctcacgg ccgaggcaat gcggcggccg tggcgccgca tgtcggggtc
002701 cccgaccgcc gacactttgc cgccgccatt cgtctcgagt ctcttgatgg actgcgccac
002761 caagtagcac gagatggcga ggacttgacg gacccgtggg cggcggcggg ggccgccgcc
002821 gccaaggcgt ccgcagaggc cccgcgccgc tggagcggag gcggagggca agggacgccg
002881 agctgtccgc gctcgcgtcg gccacccgtg aggctgtgac cgctcgcgcc gccgtgttcc
002941 gggagccgtc cccggcgccg ttggacgcgt cgtcgacggc ggggcggcgc agagctcccg
003001 cccgtggtgc tgcgcgcgtc gtcgctgatc cagcggtggc gggagatcga ggcgatgggg
003061 cccgccacgt cgcggcccta cgacctggcc ttcgactccg acggcggctc gccgcgggcc
003121 acgtggggtg catcgtcaag aagctcagtg gcacgtcgtt gccgccgccg ctgtactcga
003181 tccacgatgg gaggtctcgg gagccgctgc tgccgtcctc gacgccatct gcggcgggag
003241 tgctcgggag ctgccggcgg cgtcgccgct gtcctttgca gtcgcacgga gaaagaagag
003301 ggaaatggaa acgattaaac ggtggaacga gacggtgtga gagaggagac ggaaaaaggg
003361 acgagagtgg catggttcta attttaaaaa tttctagtgg catgtagcta atatgatgaa
003421 tagtagtggt attttttcaa tttcgtatag ttgcagtggc atggatccaa ttaacccttt
003481 aaatatacct tcatcctaag atgtcagatt actcagttaa acatgtgtga tggaatactc
003541 atacatttat ccttcaggca ggttgagtaa cattgttcca ccgtgtaact taagacatct
003601 tctctaaaaa aatgtaaaaa ataaaaagtg atataactag aactgttttt tatctctata
003661 ctgaatgagc caaatatgca tgattgatat ctcttgattc tttatttgga aaaatgcttt
003721 acttttcatt ctcagtaaaa ccatgtgatg tgtttcatat gattatagat aatgtgttca
003781 ctgcaacctt taactccttg tatggatcag gttctcagtc ataaaggata tgatggagca
003841 cttgctgata catggtcatg tggagttatt ctatatgtcc tgttggcagg ttatcttcca
003901 tttgatgaag ttgatttgac taccctttac gggaaggttt gtttcttcta acctatggca
003961 acttttttga agctcaaata agtatattgc aacccattta tgattttgtg tcagtgtata
004021 tcatattggc acatgatctc tttgtatgga agatcagatc tcatgacatt tacttgtatt
004081 tgcttttact atacactatg tgcttacgtt tattatctag ccactcattt aagcatgatt
004141 agtggtatta gtttgtgaaa tccatgtgaa aacaatatca aacatactcg gtacttctca
004201 gtgcatagat agctaagtag cttatgtaat gtagtgtgtt gctagtagtt aaagattaca
004261 gatcctggca gtggctctga tacgtgagca tagtgatctc atacctgctt tcctactgct
004321 gaaacattcc ggcaagtaag aaatgtaagc ttgccgaaac aactaaccaa ctaaaaggaa
004381 attaacctcg gcatccttta gaataaacta gttaacatgc tactactttc aataagagaa
004441 ttagcagaga agctggggag cacaacaaca atagcagact cattacacat ggcttcatag
004501 ctaaatcctc tccttttcgc tcttgtttct cttttctttt tggttggtgg aagtataaac
004561 atttgtattc cattctagta ggactgatta agagatatat ctatttgcat atttcaggtt
004621 gagatgcata tagctatttt tattttctag atttgaatat tagttcaaca tatgccttga
004681 tggatggaat agaagttttt atctaaaatt gtttttcttt tgtacagaat atacaaattt
004741 atatctgtct atttgcttaa tacagataga gagtgcagaa tattcattcc cagcttggtt
004801 tcctaatggt gccaagtcac ttattcacag aattcttgac cctaatccag ataaagtaag
004861 taaagttata gaagtgttta gctaaagaaa atctccattg gctgatatga attcaatgaa
004921 ttatagttta gatacatcac acctctagat actgattttc attggcattt tgttgactca
004981 atatgaattt tgacttggaa cagagaatca ggatagaaga gatcaggaat gatgaatggt
005041 ttaagaagaa ttatgaacct accagagaaa ttgaaagtga agaagtcaat cttgatgatg
005101 tcaatgcagc ttttgatgat cctgaggtat ttatgcttac tcttgtctta gaactgtttt
005161 tggaaaggaa tcattgcata tatatgacat tttgtatgtg ctacaatctt caaaatatgc
005221 tccaaatgaa agcctcggaa tggaatttca gttgctccag ataagaacta ttagcagtaa
005281 ctgaaactgg aatttcagtt gctccattgt taattatgaa atttgatcag aaagcctgtt
005341 tcgcactgaa gctatgctgt acgtttttac gggagctcta ttgtgccttt tacctgtcat
005401 tatataaata tataatttgt ggtccttttt ctgtgtgatt tcaggaagac gctgaccata
005461 ctttagatga cgaagcagga cctttgacac tcaatgcatt cgacctaata attctatctc
005521 aaggcttgaa ccttgcagca ctatttgatc gccgacaggt atggtgcaag acattttgtg
005581 atgtctagtg ttttcgcaaa ctaaaagttg gagtacagga ctaacactgt tattatgtca
005641 tgtcccagtt ctacattttt taattaatac gctatttggg cattaaatca tggttcttat
005701 tgttattatc ggtgaatatt cagtttagtt taaatagtgt acatgtgatt tgctgcggca
005761 gtttacatta tttttgcaat catgtattat atgcatagac taaagaaaat ccatttgatt
005821 caaattattt taacatataa ccagaggaaa aagacaatga tagaccatcc catctgatga
005881 tctttgttcc tcttctctca aacacacctt aatattgttg ctgcccaact tgacacaatt
005941 caaactatcc tctattttta ttatttttgt atgtactccg caatactggt attgcctaga
006001 agcttgttta aatgtccatg gtttaccctg tgtgtgagtt ttatagataa ttatgggttt
006061 cttctcctcg gacctaatgc ttgatgcctt gatctacagg actatgacaa gcttcaaaat
006121 agatttttat cacgcaaacc agcaaaggtt atcatgtcaa gcatggaggt tgttgctcag
006181 tcaatggggt acaagacaca cattcgcaat tataaggtaa agtttgttgc cccacaccct
006241 atagcttgtt acaacatcac ttacctatta tacagatatt gcaaatcatc ttctccttca
006301 tcttagctga caagcagttg ttctatctat tttgtgatag ttagaatgta actgtttttt
006361 ggttcattgt acagacatac agacatgagg atctgtagtt ctgttaaggt ctaaattgta
006421 tcagaagaag cagcaccctg tcttgaaaag cttattgttt tctggaatgt gaatatgtta
006481 ttttaaagtc aaataaattt cttattatct tcaatgtatc aagcctcatg tttgaacaag
006541 ttgtcaagag aacgtcattt gatatgctgg catttacatt tgaaattatt gtctaagtag
006601 caaccacaaa ctacctctga attgacacaa aaagcatgat gatatcaaaa gtattaattc
006661 attagaatgt gtttaggttg ctggtctaag gggttacaat aaactgtacc ccaatttttt
006721 gtacatatat atgcacaagt tttatcaacc tgagtaaaca gtacttcatt tcagtccttt
006781 taccactggt ttaacagtat tgaatggtat tgccagtgat acatctcttt aatttcttgt
006841 attgtttgtt tgtggccttt ttttttccct tttggcataa cattgtctgg atgctggtaa
006901 attgtgatca aatgcgggct tacagtttta atattattca tgctgttatt ttgcaagtaa
006961 aagagttata atgttttgtc ttgtgatttt gattctcaaa acttctttta ctgctaatta
007021 gttagcatta ccatggacat atttgattcc ttacatctag ttgtgctatt aatatattca
007081 gatgagggtg gaaggtctaa atgcaaataa gacaagtcat ctcgcagtta tgcttgaagt
007141 gagtcttgcc tcttttgtaa tgaagtacat ctgttgtttt attgccttct attatggatt
007201 actccaatcc ttttcatcct gagtttcctc tggtcagatt tttgaagttg ccccatcgat
007261 cttcatgatt gaactgcaaa gagcagcggg agacacctcc gattataaca aggtcagatg
007321 caaagagcct ttcatacttg catcatgctg tttcttgagg tcctacagcc gatacaccat
007381 gtatagctaa atgcacctga tacatctagg ctgtagacag cctagtgtta taaagctgga
007441 aaatattttg caatgttgtt accacagagc tttacggaga ctgtctagaa aatagttagg
007501 tactagtagt accagactga tgtgggacct acctgtgtac atgcatggac cgtactattc
007561 atttgctgct gtcttatttt tcagtttgtg ttttgtcaaa gctaaataag catgcctaat
007621 gttaaaggtt aggcatgggc aaatatattc aagtagtttc ttcacccaag aaatctgaaa
007681 tagtaatgct tataatttcc tgatgaaact tcttgcttca ctagatattt ttgtgaattg
007741 tataatgtaa aataaattga tctggataat ggcttttgat ttgctaagac atgcacaact
007801 aactccgcgt gtcttatgtg cagtttataa ataattactg cagcaaatta gacgatatca
007861 tttggaattt tccaattgag aagagcaaat caaggatatc gcggctatcg aagcgctagt
007921 ctgctttgac atccatcatt tgtatgctgt tgttcaactc tattttcatc ttctattgcc
007981 ataatatttg catttacctc tacttattac ctcttaacca taccggaatg ctcaccacta
008041 ttgcaggtac tatgtgtaat ctaatgctat gcagcttgag tggtattggg tttgttagtg
008101 gatgtatttg tagagattgc caattcaatt catctctgat cttttagtta taagagatga
008161 ccatgtacaa agggccactg aaagttttgg catctcagtt tctctgtaca atgtttgcag
008221 cgaggtatat taaacagttt gactgaccgc cgctccctgc tcatcaacac gctttgtagt
008281 ttgtctcaag atgtattaat ttctccctgc tccattagca gcttgcatc
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Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.
Update info.
