cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK120352     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os01g0870300 ( IRGSP 1.0 )
RAP - Chromosome No. 1
RAP - Location, Length 39,457,116 -  39,467,504  ( + ) ;   10,389(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 39,457,116 -  39,457,377 ( + ) ;   262 (bp)
Exon 2 Location 39,457,923 -  39,458,070 ( + ) ;   148 (bp)
Exon 3 Location 39,459,390 -  39,459,460 ( + ) ;   71 (bp)
Exon 4 Location 39,460,488 -  39,460,625 ( + ) ;   138 (bp)
Exon 5 Location 39,460,919 -  39,461,021 ( + ) ;   103 (bp)
Exon 6 Location 39,461,215 -  39,461,251 ( + ) ;   37 (bp)
Exon 7 Location 39,461,328 -  39,461,437 ( + ) ;   110 (bp)
Exon 8 Location 39,461,564 -  39,461,707 ( + ) ;   144 (bp)
Exon 9 Location 39,463,587 -  39,465,919 ( + ) ;   2,333 (bp)
Exon 10 Location 39,466,785 -  39,467,504 ( + ) ;   720 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
MSU ID cDNA
Accession No
RiceXPro
FeatureNum
Genomic Nucleotide
Accession No
Genomic
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
UniProt
Accession No
UniProt Entry
Name
Os01g0870300 Os01t0870300-02 215071 J013066B21 20566 LOC_Os01g64990.1 AK120352 18192 AP008207.2 255672756 BAF06846.1 113534463 NC_008394.4 297598437 NM_001051467.1 115441304 NP_001044932.1 115441305 Q84KJ6 AMT31_ORYSJ
Os01g0870300 Os01t0870300-02 215071 J013066B21 20566 LOC_Os01g64990.2 AK120352 18192 AP008207.2 255672756 BAF06846.1 113534463 NC_008394.4 297598437 NM_001051467.1 115441304 NP_001044932.1 115441305 Q84KJ6 AMT31_ORYSJ
Os01g0870300 Os01t0870300-02 215071 J013066B21 20566 LOC_Os01g65000.1 AK120352 18192 AP008207.2 255672756 BAF06846.1 113534463 NC_008394.4 297598437 NM_001051467.1 115441304 NP_001044932.1 115441305 Q84KJ6 AMT31_ORYSJ


Chromosome: 1 ,  position: 39,457,116 - 39,467,504 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 agcactaaaa aaatttggtg aaaaggaacg acgagccggc gacgagagct ccagaaccct 
000061 agccatggcg ggagaggcag ggggagaccc ccgagcgtgg cttgccgtcg acgagacggc 
000121 ggcggccttc ctctcccgct ccctctcggc gcggcccccc atcctcctcc cgccgccgct 
000181 ccaccgcgct ccgctccgcc cgggcaacgt cgtcgagatc gctggcccgt ccaactccgg 
000241 caagtcccag ctgcttctca cggtaagaga atccaaagct ttctccgcct aaatggttag 
000301 cgaacataag gcatttagcc ctcacttagt cgtcctttct accagaactt ccctttagca 
000361 aatgtcttaa gaatttcagt atctgctgca agctttgatc gaccccaatt tgttatgaag 
000421 ctaatgatag tgcatatctg cattcataat ctcaatatgg gattcaacac aacttatgat 
000481 aagtgaaaga aaaagagcaa tgaccgaatg acactatgct gtgcgggagt tttagaaaat 
000541 cggagatatt tcgttaaatt actgctgttt ctgggaacac gggacatagg agtaatttac 
000601 aaagaggggg gggggggggg ttgggagggg gattaccttg tgtgtttggt gaaaggtact 
000661 agtttagaat gctataatgc ttcatgcttc ataaatcata agtggataaa ctcaatgcca 
000721 ttttgacacc tatatatttt tttcaatgaa gcaatgtaaa agttaagtgt gatctgctca 
000781 gtcactgagt tgttattact attgtaggct gcagtacaat gcatattacc gaaggagtgg 
000841 aagggtacct attttggggg cctgggtaaa gtggtcatgt acttggatct ggactgccga 
000901 tttgatgtgc tgcggctggc tcaaattctg agaaatcgca ttggagagtg ctgtggtaca 
000961 gttttgcttg cattgtgaac tttgcattat taagtcatgc atcctatcca acttagagca 
001021 tgttgaacat gatgcatgct tttatgggtg catagagctg actgattaac tgtgctgtct 
001081 tttgttcata atgttgtagt taggaattga tttgtgtaaa tcttttatag gcttaggctc 
001141 cctccactat tctacaccta catacccctc aattcttagt ggagaataac tgtgccataa 
001201 atagacaaat tttgattctt attgtttcca atcctctgta attacaggct ccacaaatcc 
001261 aacaaatgaa gaatttgcaa aggatggcgc tacaaatagt ttttccgaaa acacgctatt 
001321 ttctgagtgc atgaagcgtt tcttgtatgc ccgttgttac aatagttcag attttatagc 
001381 agctttgcag gcaagtttta tctgacaata tgtttataca cgggcacatt agcatcctca 
001441 tttgtgtcct ccttttcttt aactgatggc tgacatgaaa tatgtaaaag tatataaaca 
001501 gggggctata ttaaattatg cctgaccctt tgaaccactg gatgaacaag ttggtttctt 
001561 taggttgtat acttgtataa ttgctgagta tgcaaaaggt tccgttgttc cttgtttaga 
001621 tacagaagag tatagggcta tcatgtcagt ttgcctttct ggtaccaaat taaccaactg 
001681 atcatttgct caggtgttat gttctgacag ttgacttagg catttgcagt aacatttctt 
001741 gaatattcat aatggtttga caaatttttt ttgtcccata gaagacaaaa aaaaaaaact 
001801 tttgccactc atgtccaaca aaattacttc attcactcat ggacatctgt tgatttctat 
001861 cgtaatatat ttgtaaaact caataaatgt ataatattat gtaagtacct tttgatcaat 
001921 cattaatctc gacttatggt tttcatgtat ctaaatattt aaaaatatat tgatcctgaa 
001981 agttttgaaa acacatagag aatactgagt tcttgctcat tctctggaat caccttatat 
002041 ttgtcatgga cctaagctta atctttatga gataatcata agatagctgt attattgaaa 
002101 aacagtcaga accatgaaat gcttttgtag aatgaattac aaagaaggca acacattctg 
002161 ttcccctttt atttttgtaa cagtctagga gttatgccat gtgtagataa gttatatctt 
002221 aatgcgtata taagatacac gttttgttat tataactggt tgttcatttt acagaatata 
002281 cattcccaat caccagcaaa gagcgaagtt cttggtgttg gcatatattt ccttatgata 
002341 gacaggtatt ccttttcaag gtttcctttg tctttctatt tgttatggtc acacttattg 
002401 catcttttgg tctgccgctt gtattgaagt tgtggctact ttctcaaaat gctgcatcat 
002461 tcaaattttt ttaatggtat tctgcattgt tctcacataa ccatttggcc ctccggactt 
002521 ttcttctgta ctttttattc ttgtagtaac tgctaaacat tttgtaacat tatccctttt 
002581 ccagcattgg ctcattctac tggatggatc gtgattctca acctatcaca gagagtaaag 
002641 ggtgattgcg aaaaacattt catgcagtat tagcttcata tcctcctgat tttgtcatgt 
002701 gcatatatca caataacaat tagcatagat gttttaatta attattgtct cttctacact 
002761 tgtaaacatg tgaataaaac aggtttaact taatacttca tctgctaaag ggtaggatgg 
002821 tacaatacta cagtacatag aaagtatgca tcctcttgct atctcgcata cataaattaa 
002881 aatagaagag ttacagcatg ttacacagtc acacacactc tgaatgcaat gggtagtcac 
002941 tatcacttaa taattatcat tcaaaagaaa ataaatgcta cttgcatttt caactaatat 
003001 tagatgcatc attattgcat atgcaacatt tacacaaaaa acatcatgaa atacagtatg 
003061 gaatacacat gtacttgtaa tgatagtgct cagtggcaca gttcaaacta caaaatatta 
003121 ctacaactta ggtgagaata actaggtatg tttcaattgc agtgtattgc ttaggaaaga 
003181 ggattaaaat gcgtacttgt gcatgggaac actgtacaaa aacatgttag actttgttgg 
003241 aaacatttac aaaattttcc aacctgaaag tatccagcat tttggattac aattacttct 
003301 gccaattctg taactctatc tcactagtat ctctttgctt ttatgctaac cctttcacaa 
003361 ctattcatgc aggagaactc tatcactgca gagtatgaca gaaacagttg tccaaaaatt 
003421 acgcaatttt ttgcaacttc aacctgtttt ggtgatggcc accaaggcac ccatatatgg 
003481 cgaaggattc actggaaatg atttccaaag gtaatatcac taccagcatg gacccttttt 
003541 actgttatct gatggatgca aatattttac ctctcaaaag gatgattaag gtgtgataag 
003601 gtgattcatt caggaggaaa tggcacaact aattgatcac tctgatttgt tttacatatt 
003661 tttgccacca tgcatttgct ctgtttaaaa tcaacatgct tccttttgtt gcatatgtca 
003721 agttctttta ctcaggatca tgatcttccc atgtgaagaa gctgaaaacc tgaaggatac 
003781 tggctttctt tttgggtatt taggggtact tcaaaacaga tgttagagga ttcaacaatg 
003841 agatgcatag gtcaggagga agagaaaaac atctcatacc gtgaattcat gccgtcagta 
003901 tggcaggtcc gtgatcttta ttcattaaaa tgttaattct gatttcgtac aaagtattac 
003961 agaacatgct aacagtaagc ttcaatcgcc atttgatttg tttgttgtat gcatatatac 
004021 attgccgtgt ggccagtatc tatttatgaa tcataaccac ataactgtct aaaggatttc 
004081 tgaatttgtg ttcttgcagt catttgttac acacaggata aagctacaag atttaggttg 
004141 gtaaatggtc tttttatgtg gttcatgatt ttgtccttat tttcattgca tatgtttatt 
004201 tgatttttac aggacaagaa gcagaacttt tctctggtca ggaaaacaag gagctacctt 
004261 tacgtacttc tgagtggatg cagccttccc tcaacacaaa ggataagttt tctattacag 
004321 atgtaagcta cttatatttt ttttcttttt gtaagctact tgttaccttt ctttctgtta 
004381 tcaatgtact attttttttt acagtcccat gcatattttg atttagacac gtccttttcc 
004441 atgatcagga tggtgttatt cttatccact gaaggttatc agggtttccg ctgatgtaca 
004501 tatccaactt cctggctgga ttattgtaat ctgtggaaaa acctgtaaga gatgctaata 
004561 ctctgataac acctatgact cagaaccctt aggtgagtgc agagtgaacc tccctgcttt 
004621 tacagaataa atgatcttaa attttctcaa actaagaagc taatcaaacc aactagcaaa 
004681 gaattcacac gtctcttaca tgaaagtcat taaatctatg ataaatcgaa tgacgcagag 
004741 aaaagaggct ttgtgtttgt actgcagaaa atatatctag ataactgcag aaaagaggct 
004801 tgtccatggt ctctgttaga gaactggctg tagtttattg ggttgtttta tcttcaaata 
004861 tatctagcaa ataatctgac ttaagtaaaa catttctaag gttaattgaa attttaggag 
004921 gcgtctaaaa caattgcagt actatacata ccgaggtata ttgtttctca ccatgagccc 
004981 ctgatgcact tttctggatc acagtacaag gtggtctgtt tttttatgat acttgaaaag 
005041 actattcaac gatgataaaa taactcatgt ttaatttaat tactgcaaat ttttcaccat 
005101 tatacttgtt ttaatttgtt agaatgcaac tgtcatatta ttttgaagtt tactgtgttt 
005161 tctcacttcc cttgatgcac agcttctgtt agtcgatctt actttgctct aatatattat 
005221 tttccatact aaagcccaaa cataaactca caaaatatca tcaatgaagc aatagcagaa 
005281 aaatcatgcc atttataata catgaatctg acagtgaagc aaaatgatca ggtcaccgtt 
005341 tgtcttggct tttgatgttt ggcacagcat agttggactt ggaactctgt attgattgct 
005401 gggaaaaagc aagccaagct tctttatctg gactaatggc tgcattatac taatgtcacg 
005461 caagtttgac tattttctga ttttttaaaa cacttctatt tctgcgtggc cattaggaag 
005521 tggatgcctg aaaacattag atgggggaat taaaagatat aatgcttcag agtcaccaat 
005581 ttatcaggta attccttcat agccgtgcgg cagctgcagc tcacattatg cgagctgctt 
005641 tctctgttag atataactta tgtagattaa ggctaatctc agtgccagaa aatgaggggt 
005701 ttaggtttga ggaatatgag aatatttatg tagattggac ataaaatacg acctagattt 
005761 acttgctagt ttattcaagg ccagctcaaa ttcatgaagg tttggaaatt agttctgatt 
005821 gtgcttatgc tctttttttt ttccctgtta ctagatggct tgtcttatct gtcacattgt 
005881 caagcactat gagaactttg tctaacatca catttgatgt gaatctttgt gtgcctgcta 
005941 catatggatt tgttcttatt ttgtgagttt ctacttgagt tcctagctgt catttttatt 
006001 cttttttttt gttccagcta gtgcttgtcg ctcactcata gcaagatacg cacccttctt 
006061 ggtgatccct aagtataccc aaacacttta ttgcgttatt gtagttggta tagtcatctt 
006121 cttgtccatg ctaggtcgct agcattgtgc tttttccact tctttttatc aattgttgtt 
006181 cgtcaatcga gcatagcagc tgatgtacta gtttaacaca aactatacaa ttccacggat 
006241 gaaggtgaaa tggaagatgt taacggcaat ggttactttc tgccggcctt gcaattgacg 
006301 agttggtcct ccaaatatga ttgtagatgt cgcttttgtg ttttatgtaa tcatatgtgc 
006361 aaatgatcta cctgagatga tgttgactaa tgttaattta gatgataatg gtatattctt 
006421 gcagacgagt tctttccgac gcccctgata catatctgtt gtcttgtaca gagtacagac 
006481 tttccatggc ggcatgagtg tctcgtggtg tcgtgcagta gccctgaact ctttctgaat 
006541 cacgaactgg ataaagcttg attgagagag ttggcaaggt tgctgttcac attaatctgt 
006601 gacccaaggt gtaaacaaag cttttggaat gcaccatgga ggtcagggtt ctccaaaccc 
006661 ttttaatctc gtggaatgaa aagcaatgga ggactcatat ttgctgtagc tttcgaccgt 
006721 ggagctcaca gaatcctcgt gcagaactgg gtgtagcact cactacactc catcccgtgg 
006781 gagcttttgg tacgacaaag tttgcagtca tcaaagtggc agtgtaaaat ggtgggagac 
006841 ttggggtgac gaccttgtaa tcttgctggt gaatctcccc ttctaaaatc ctgtagcaga 
006901 tgtccaagaa tattcaacca actgctgaaa agtgaaaacg accttggatc ccatattctc 
006961 attgtattgg agaggtcagc aagctgctag tgctgcaata tggaagcagg actggaggag 
007021 cagaggcgat gcgtttcacc caatgcacta cgaggtcaga cagccatctg ctgccacgtg 
007081 tactgctacg gtcagccgta tgcgaagcaa acaacaaccc actactggac agcaaaaggc 
007141 ccagtctact tgccaatcat tcgttgctcg gccggttctg tacttctgac gatcgcaggt 
007201 acaactcgtc ggcctgaaat cctgtatgct tctttacata ggattttttt cccctttatc 
007261 atgcattaat cctctctcat ttgatacaaa atcgtgaaag acttgacact tcgataaact 
007321 cagaatagag gatccgaatg gaaatttact ccaatttttt ttaaaaaaat taaaaataaa 
007381 atagggcagt ggctacctag gacaagagca tccagccagg ccgaggaaaa tcctttacca 
007441 gccaagccaa aacattcaca agtccagaag cacacaagac tcgatcactc gagtctctac 
007501 gtgaatctta gcggaagata agggagcatc agtacagccc agccaatagg acgcgttctc 
007561 ctccaatccc aaagccgcgc gcttggattc ttccctcgcc gatctcgcga gccccagctg 
007621 tgctcgttca tcactaggct ctccctcgtg tcactcacca ttctattcgc tctcgccgcc 
007681 agctgcctcg ccgcctcacc ctatatatat atctcgccgt aagttcccca tagcttcacc 
007741 atcgccgtgc accgaccgac cgatctccgg ccagccggcc agccagccag ccaccgtagt 
007801 cgatcgtcgt cgagagagcc gctactacgt acgtacgcac gccgcgatgt cgggggacgc 
007861 gttcaacatg tcggtggcgt accagccgtc ggggatggcg gtgccggagt ggctgaacaa 
007921 gggcgacaac gcgtggcaga tgatctcggc gacgctggtg gggatgcaga gcgtgccggg 
007981 gctggtgatc ctgtacggca gcatcgtgaa gaagaagtgg gcggtgaact cggcgttcat 
008041 ggcgctctac gccttcgccg ccgtgtggct gtgctgggtc acctggggct acaacatgtc 
008101 gttcggccac aagctcctcc cgttctgggg caaggcgcgg ccggcgctgg gccagagctt 
008161 cctcctcgcc caggccgtgc tcccgcagac gacgcagttc tacaagggcg gcggcggcgc 
008221 cgacgccgtg gtggagacgc catgggtgaa cccgctctac ccgatggcca ccatggtgta 
008281 cttccagtgc gtgttcgccg ccatcacgct catcctcctc gccggctcgc tgctggggcg 
008341 gatgaacatc aaggcgtgga tgctgttcgt cccgctctgg ctcaccttct cctacaccgt 
008401 cggcgccttc tcgctgtggg gcggcggctt cctcttccac tggggggtca tggactactc 
008461 cggcggctac gtcatccacc tctcgtcggg tgtcgccggc ttcaccgcgg cgtactgggt 
008521 ggggcccagg tcgaccaagg acagggagag gttcccgcca aacaacgtgc tgctcatgct 
008581 caccggcgcc ggcatactgt ggatggggtg ggcggggttc aacggcggcg acccgtactc 
008641 cgccaacatc gactcctcgc tcgccgtgct caacaccaac atctgcgccg ccaccagcct 
008701 cctcgtctgg acttgcctcg acgtcatctt cttcaagaag ccgtccgtca tcggcgccgt 
008761 ccagggcatg atcaccggcc tcgtctgcat cactcccggc gcaggtacca tcacactata 
008821 tatgcatgct cctcatcgct tgcaccagtg caccgcccat gcttaatcta cacacagtac 
008881 actaggtgat cttcgatcgt ttatactgaa aatgaatttt gggcgaaaaa aaaacattag 
008941 acatgactaa ttgagtttta tacttattat tactttctcc ttttcataat ataaatcgtt 
009001 ttggatgttt ttttaaaaaa aatcttttaa gtttgaataa gtttataaaa taatttagca 
009061 aacatctaca aaatcattag tttcactaaa tatagcatta gatatatttt aataatacat 
009121 ttgttttgta ttgaaaaata ttattatatt ttttagagtg aatttcacct gacccatata 
009181 ttatggtcat aagttgcaca aaatcacaaa gtttcacaaa accacactct tgattatttt 
009241 gattttggtc taccatactt ttgagttcta taatcaaatt tcaagtttat gagttattat 
009301 ctatcatata aatgttacat ctatgttagt taaacttttt aaaattttga tacaggagtt 
009361 tgtcaatttg gttaatggcg tagttttgtg aaactttaga actataatac ccggggttac 
009421 gttccacgtg ctatggtttt gcgtaaattg gtccataata gatgatgctt tataaaattt 
009481 actctatttt ttgataaact cgattaaact ttaagaagtt taactaggaa aaggtcatat 
009541 gaaacggatg gagtataaac ttgaaaatag atttatctga aattttaaac cgagttagta 
009601 aaatctgtat ctggggctgg gcgtaactga tccgtcttga acggcgtctg catatgcatg 
009661 gtcgatcagg cctggtgcag ggttgggcgg cgatcgtgat gggcatcctc tccggcagca 
009721 tcccgtggtt cacgatgatg gtggtgcaca agcggtcgcg cctcctgcag caggtggacg 
009781 acaccctggg cgtcttccac acccacgccg tcgccggatt cctcggcggc gccaccacgg 
009841 gcctcttcgc cgagcccgtc ctctgctccc tcttcctccc cgtcaccaac tcccgcggcg 
009901 ccttctaccc cggccgcggc ggcggcctcc agttcgtccg ccaggtggcc ggcgccctct 
009961 tcatcatctg ctggaacgtg gtggtcacca gcctcgtctg cctcgccgtc cgcgccgtgg 
010021 ttcccctccg gatgcccgag gaggagctcg ccatcggcga cgacgccgtg cacggggagg 
010081 aggcgtacgc gctgtggggc gacggcgaga agtacgactc caccaagcac ggatggtact 
010141 ccgacaacaa cgacacgcac cacaacaaca acaaggccgc gcccagcggc gtcacgcaga 
010201 acgtctgatg atacgtgtcg gttttttttt cttttccttt cctttttggg gttgtatacg 
010261 ttacgaaatg ctgcggtttc ctgtcgtgga ataatgtggt ggtggttctg aaacgggttt 
010321 cttcttcggg atgctctggt ttgatgattt cgaccattcg agatttaata cagcggctac 
010381 tttcttttc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs  
Acc. No. Clone Name Length
AK252569 FLbaf156f20 1734 view details
/rice/oryzabase