cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK120308     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os01g0648000 ( IRGSP 1.0 )
RAP - Chromosome No. 1
RAP - Location, Length 27,849,422 -  27,855,846  ( - );   6,425(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 27,849,422 -  27,850,656 ( - );   1,235 (bp)
Exon 2 Location 27,851,004 -  27,851,079 ( - );   76 (bp)
Exon 3 Location 27,851,177 -  27,851,374 ( - );   198 (bp)
Exon 4 Location 27,851,802 -  27,851,986 ( - );   185 (bp)
Exon 5 Location 27,852,072 -  27,852,105 ( - );   34 (bp)
Exon 6 Location 27,852,265 -  27,852,363 ( - );   99 (bp)
Exon 7 Location 27,852,459 -  27,852,704 ( - );   246 (bp)
Exon 8 Location 27,852,805 -  27,853,122 ( - );   318 (bp)
Exon 9 Location 27,853,208 -  27,853,265 ( - );   58 (bp)
Exon 10 Location 27,853,445 -  27,853,810 ( - );   366 (bp)
Exon 11 Location 27,855,273 -  27,855,846 ( - );   574 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No
KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
MSU ID cDNA
Accession No
RiceXPro
FeatureNum
Genomic Nucleotide
Accession No
Genomic
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
UniProt
Accession No
UniProt Entry
Name
Os01g0648000 Os01t0648000-01 J013054N15 215027 J013054N15 20548 LOC_Os01g45990.1 AK120308 34450 AP008207.2 255672756 BAF05627.1 113533244 NC_008394.4 297598437 NM_001050248.1 115438866 NP_001043713.1 115438867 Q0JKV1 AKT1_ORYSJ


Chromosome: 1 ,  position: 27,849,422 - 27,855,846 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 aagctcgatc gaagctctca cctctcctct cttctcttct cttcttccgc gacacgtctt 
000061 cgccgccgcc gcagccgccg tcgggcgtcg gctctcctcc acttaccaga aaaccgaatc 
000121 accgagaact tctctctcta gtattcaagg cgagagattc ccaccccgcg attcccttgc 
000181 aggccgccag atttgtgggc cttgtggggg tgggcgctcc attaaacccg agagagggga 
000241 ggcacgcgcg cccgccgagg ggcagcgcaa tggcgaggtg gggcgccgct cggatggcgg 
000301 cgtgcgggcc gtggggccgc aaccggaggg tcggcgccgg cgacgcgttc gaggccagcg 
000361 aggtgaggcg ggacgggcgc agcaggatga tgcccgcgtg cgggccgtgg ggggcgggcc 
000421 atggcggcgg ggacccggcg ctcgagaggg agctgtcgcg ggacggcagc cactacagca 
000481 tctccagcgc catcctcccg tcgctcggcg cgcggagcaa ccgccgcatc aagctccgcc 
000541 gcttcatcat ctccccctac gaccgccgat acaggttagt tcgcaacctt ctctgtctct 
000601 ctcttcccta tcgccatcac aactctcgcc gctgctttgt ttcagatttt ttttttcttg 
000661 cgcagtctct tgtgtacagt cctgctatac tggctgcatt acagctttaa ttttggtgat 
000721 ggtcagcgca gaagtgcttt atttttgtat tcatagttgg cactgaattg gttcgttctg 
000781 cctcttgtta attccaatga gttattatat gttgtcacga aatagatggg ttgctcatga 
000841 aattttgttt tttctccctc tgttttaatg gctgctttgc tgccgcaatt gtcagcaaat 
000901 tgtctttaat gtgttttcgc ggaagtgaga agtagaggtt tttgttttta ctgttcctgg 
000961 tttgacctcg actgaataat tgatttgtct atttcttgct ttttatagta ctcattatct 
001021 ccgttttaat atggctaatt ctatggcttg tgagtgcttt atttagttat tcgattttct 
001081 tttccttgag gaacgacaag aaaagcgtga ttttgatgct gacgttcctg gatttctagt 
001141 actcccgttt tgcgcttctt tacgcaatgc ttcgttgtcg aaagagctct ctcacggaac 
001201 tcgcatggaa aacttttttt ctgatttgtt tactgcaatt atttgccgtt ggacggacga 
001261 ggattaataa ccttgtattt tagttatgga cttggtggtt ttacgaattg ttcagattac 
001321 cttttttgtc ggcctcaatg acagtcttct gcaatttgaa gttattctgt gctatcattc 
001381 aattaatata tttttttgtc tagtgagagt tctgttgtcc atttattatt tgatagtatc 
001441 ataaaatcgc attacattaa tctccatttt tcttcggatc actctttcgg agataatctt 
001501 gtatacacag tatacagtaa gtagtacggt agtttctgtg gtacttctag ttgccacttg 
001561 ccaccgagtt acggccagta catatacagt accgttgaat aaacagagat tacttgtaca 
001621 ggaataagaa atcacggaac tttgaacgaa agtccatcta ataccctaaa ctttaaaacc 
001681 gaacatctaa ctccctaaag tttgcaaccc ctgcagtggt ttcgattttt gaacagtggt 
001741 ttcgtgtatt tggatgctta taatgactaa gatgacatat ttgtatttcg tcattccttg 
001801 gccgcaagtt atattatatt atgatgttat gcatataatg ctagtgtatg gatttcacaa 
001861 tataaatatc ttccattcat ggtttagggg gtatatggac ttcttcctac aggaatatat 
001921 tgttttttcc tttgtaagca tggtgttttt gctagtatga aaagcaaata gaaactttgt 
001981 aatattgaaa tcagaagaat gagtaattct aacatttaat tgttaatact atgcagaatc 
002041 tgggagactt tcctcatagt tcttgtagtc tactctgcgt gggtctcacc atttgaattt 
002101 ggcttcattc cgaagcctac gggggctcta gctacagccg acaatgtggt gaatgcattc 
002161 ttcgcggttg acatcattct gaccttcttt gtggcttatt tggataaaat gagctatatg 
002221 cttgaagatg atccaaagaa gatcgcatgg cgttatagta ccacatggct tgttcttgac 
002281 gtggcctcca ccatcccatc agaatttgct cgcaggatac taccttcaaa gcttaggtca 
002341 tatggatttt tcaacatgct tcgtctgtgg cgtctccgca gagtcagctc tctgttttct 
002401 aggtatgttt ttatcgtgca catatagaaa attctatgat atacattctg ttttggggtc 
002461 caacatttca atctgaacct gactgaactc ggttaaaaca tagtattaat taggctagag 
002521 ccactgccat ttttgccttt tcaatttgtg tagtaaactt aacacttttc actttttcta 
002581 ggttggagaa ggatagacac ttcaattact tctgggttcg atgtgcaaag ctcatttgtg 
002641 taagtgactg tatttatgtt attttcctgt gaagttttaa catttttgtg gaacatccca 
002701 ttttctcatc ctttgatatt gcaggtcaca ctttttgctg tgcactgtgc ggcatgcttc 
002761 tactatcttc ttgctgatag gtaccccgtc ccaacttcta cgtggattgg caattacatg 
002821 gcagatttcc atgaacggag cttatggatt cgctacgtaa catcagtcta ttggtcaatc 
002881 accactctta ccaccgtggg ctatggggat ctacatgcag aaaatacaag ggagatgatc 
002941 ttcaacattt tctacatgct ctttaacctt ggtttgaccg cttatttgat cggtaacatg 
003001 accaatttgg ttgtccatgg cactagtcgt actcgaaact atgtgagttc tttttgttca 
003061 acctttggtt gatacttgca tctaactgct cttttaaagt ttgattctaa caagtagtgt 
003121 ttgttatgtt ttgtactaaa agagggatac aatccaagca gcaacaagct ttggagtaag 
003181 aaatcagcta ccacctcggc tgcaagatca gatgatttca catattagct taaaatacag 
003241 gacagattca gaaggtcttc aacaacaaga gatccttgat tcactgccta aagctattaa 
003301 atctagcatt tctcaatatc tgttcttcca tctggttcaa aatgtttacc tgtttcaagg 
003361 agtctcaaat gatctgattt ttcaactggt aaggatagag ttctttctgt agctgtgttt 
003421 ttgtagttgc gtactgttac agaatatgct tatctggttc ttttacttga tttcgttttt 
003481 gaggtttcgg agatgaaagc tgaatatttt ccacctaggg aggatgtgat tttgcagaat 
003541 gaagcaccca ctgacttcta catcttagtt tctggtagtg tggtaagaat actctttaat 
003601 aactactttg ttatttccaa gttgatataa tactaagctt cagagagtgc agttgaaaaa 
003661 gtaggagtaa ttgagctatc agtactgata tcagttttag ttatataaat ggtcattctg 
003721 aaattcgagt cacttttgca ggagttagta gagcagcaaa atggtgcaga ccaggcaaga 
003781 cttctgttgc tttgagactt aattccaagt gaactcgtgc atcaattggt cctaaatatg 
003841 ataacttgga attctgcagg tgatacaagt ggctacgtca ggagaggttg ttggagaaat 
003901 tggggttctt tgctacagac ctcagctatt cacagttcga acaagatcct tgtgccagtt 
003961 gttgcgtttg aatcgtacag cttttctcag cattgttcaa tccaatgttg gggatggaac 
004021 tatcataatg aacaacctta ttcaggtcta ccatttattt gttggtctct tctctgtaac 
004081 atttatcgca tatgtttgca tttgtagaaa gatttttcat attcagagtg gtaacctgac 
004141 cactgaaact agctctgtag taactcctaa atcgaaccac cctggaacct gcatcatctt 
004201 gtttaacaat atgtgaagtt aaactagtat tccctcatat agccactaga ttatcttgaa 
004261 cacagaaatt gtttattcat gtcgactgtt ctgccattat ctaaaaaata tgtcgactgt 
004321 tctgcgacta tcagacttga tgttcactgt tgtctgttgt gatctggata agggctgttt 
004381 attttgtttt tgcttcattg acatttatca tgctttatgt cgtgcagtat tttgagcagt 
004441 actgagatcc actctttttt tttctgatgc agttccttaa agagcagaag gagaacagtg 
004501 taatggctgg tgtcgtaaag gagatagaga gtatgctagc tcggggaaat ctggatttgc 
004561 caattacact ctgttttgca gtaactagag gagatgattt tttgttgcat caacttctta 
004621 agcgtggtat ggatccaaat gagtcagata atgacgggca taccgcactg gtcagtttag 
004681 tcaactatac gtatctgtgt tgtttatttt tctatggact tatgctgacc aagaaagtta 
004741 ccactttcaa atgttcatga ttaacagcat atagctgctt ccaaaggaaa cgagcaatgc 
004801 gtcaggcttc tattagaata tggagctgat ccaaatgcca gaggtatgcc gaaaactgga 
004861 aaattttgac agcatatagt gtacaattta actgtaagag ttaaatggta tgaacagctg 
004921 gatgttatat ccaaaccctg caatatgtca tggcctcacg tcacctgtaa atcttacgag 
004981 gctaaacttg cttgcaaaat tcctgttgaa ttttctacca atctaacatc tagaacttac 
005041 tgatttactt aatagaattt gctccatgag tttttgcgaa gacgcaaaag ttttgtgcgt 
005101 cgatgtaatt aactccatga gtgatgagtc ttatatacag atgttcaata caccatctga 
005161 catgccacga ttttcttttc cattttccag actcagaagg aaaagttcca ctgtgggaag 
005221 cgctgtgtga gaagcacgcc gccgtcgtgc aactattagt cgaaggcggc gcggatctgt 
005281 cgtcgggtga cacgggctta tacgcttgca tcgccgtgga ggagagcgac accgagctgc 
005341 tcaacgacat cattcactac ggaggcgacg tgaacagggc tcgccgggac gggaccaccg 
005401 ccctgcaccg cgccgtctgc gacggcaacg tccagatggc cgagctcttg ctggaacacg 
005461 gagccgacat cgacaagcag gacggcaacg gctggacccc gagagccctc gccgagcagc 
005521 agggccacga cgacatccag ctcctgttcc ggtcgcgcaa ggcggcgacg gcgagtggcc 
005581 accatcacgt cccaagctcc accaccacca gggtggcgcc ggcggcggcg gcggcatcac 
005641 tgatcgggag gttcaacagc gagcccatga tgaagaacat gatccacgaa gacgccgacc 
005701 tgcccagccg ggttctcccc gagaagctcc ggaggaagcg ggtcaccttc cagaactccc 
005761 tcttcggggt catctcgtcg tcgcaggcgc agcgggagac cgaccacccg ctctcgaggg 
005821 gtggcctcgc ggcgacgggc tccccgaacc cgagcagcgg cagccgcaac gccgtcatca 
005881 gggtgacgat cagctgcccc gagaaaggga acaccgccgg gaagctcgtg ctcctgcctc 
005941 agacgctgga catgctcctc gagctcggcg ccaagaagtt cgacttcgcg ccaaccaagg 
006001 ttctcaccgt ggagggcgcc gaggttgacg aggtggagct catcagagac ggcgatcatc 
006061 ttgtgctcgt cagtaatgaa tgggatgcag agaagatgaa aggcaagagc tagtaaagga 
006121 gttgtgtgtt tttttttctt tttctttttt ggttgtttac tgttgatttc caagaaaggg 
006181 gagatagaat ttaccccgga gtccaacggt tagctaagga ataactggaa atcattggta 
006241 tagttattcc accatgaaga gatggtgaaa ttgatgggtt acgtccggtg ttcgtaagta 
006301 gagaagcgta agaatttgat tttgttatag cgtgttgtga tgttagcctg tttttgtttt 
006361 agttggcaag ttgatctgct ggcatgtaca gttttacgct tttctaattt ttgaaggaaa 
006421 agtcc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ700545 whsd20h07 694
more... (Total Hit Count: 3 )
/rice/oryzabase