cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK119457     Link to RAP-DB ( IRGSP 1.0 / Build5 )
RAP ID Os01g0101200 ( IRGSP 1.0 / Build5 )
RAP - Chromosome No. 1
RAP - Location, Length 61,112 -  64,537  ( + ) ;   3,426(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 61,112 -  61,295 ( + ) ;   184 (bp)
Exon 2 Location 61,385 -  61,905 ( + ) ;   521 (bp)
Exon 3 Location 61,996 -  62,114 ( + ) ;   119 (bp)
Exon 4 Location 62,248 -  64,537 ( + ) ;   2,290 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No
KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
Tigr ID cDNA
Accession No
RiceXPro
FeatureNum
Genomic Nucleotide
Accession No
Genomic
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
Os01g0101200 Os01t0101200-02 001133E05 114640 001133E05 3142 LOC_Os01g01120.1 AK119457 4386 AP008207.2 255672756 BAF03655.1 113531272 NC_008394.4 297598437 NM_001048276.1 115433965 NP_001041741.1 115433966


Chromosome: 1 ,  position: 61,112 - 64,537 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 gcagatgcag atgcagcagg ctaccaccgt tctcagcagc agcagcaacc ggccttggac 
000061 gctgtggtgc catcctgtcc cagtagtctc ctccccatcc cacgccaaaa ataagaagca 
000121 tggcctccga ctccgagcag gcatggccat ggcctcctcc gagcttcctg acctgagcgc 
000181 aatagtaagt aagctgcttc gatcttacta atttgttgag cattattatc ttaatttgtt 
000241 gattgatgga tggatggatg gatggtggtg cagcaacgcg tggtgctgga catcgagggc 
000301 accacgacgc ccatctcctt cgtggcggac gtgctcttcc cctacgcgcg cgacaatgtc 
000361 cgccgccacc tggccgccac ttacggcagc agcgaggaga cgcgcgctga cgtggccctg 
000421 ctgcgggcgc aggtggagga ggacctcgcg cagggcgtcg acggtgccgt ggcggttccg 
000481 ccggatgcgg aaggggaagg ggaaggcgcc gtggtggagg ccctggcggc gaacgtggag 
000541 agcatgattc gcgcggacag gaaggtgacg gcgctgaagc agctgcaggg gcgcatctgg 
000601 cggcggggct tcgacagcgg cgagctgcgg agcgaggtgt acgacgacgc ggcggacgcg 
000661 ctgcggcggt ggcgtgccaa ggcctacatc tactccagcg gaagcaggga ggcccagcgc 
000721 ctcatcttcg ccaacaccgc tgcacacggc gatctccgcg accacctctg cggattcttc 
000781 gacaccacaa tagggtgggt gcctacctta gctggtagta aggcttacca tccatcacca 
000841 acaaaacaaa caattcacca tgcatgcatg cacccatgct gcagggccaa gcgcgaggtt 
000901 agcagctact acgagatctg gcagactctg ggcacggacc gcccctccca gatcctcttc 
000961 ttgacagacg tctaccaaga agccgctgca gcaaagactg caggtcagcc tcactccact 
001021 ctcactcagc aaatttgccg tcccctccgc cgctgcgctg cacattaaca tcactcctag 
001081 tagtacttca gtaacacctc tattaatcac aagtatattt ttttcttccg ccgcaggcct 
001141 tgaggtgata atatctgtca ggcctggaaa cgcacccctc cctgataatc atggttttca 
001201 cacaatcaca tcattcgctg aaatctccat ctgaacctag ccagaaatgt cttgtactat 
001261 acaatctgat ccgaacaata ttctaccgta cgctagcagc acagttagca aatggtttgg 
001321 ttaggtttaa ggcaagacaa tctggggtgt aaataaatgt gtaatagtcc caatcaagct 
001381 aatactatca tgctcccatt ccatccaaac ctggaacaac aatttcagat gcatatacta 
001441 ctactttaca tttgttcctt ttcctgcata aagaccgtcc atgtcttact gaatccagta 
001501 aaattagcac atgtatcctc cttgtctgat ctgatgacga atcattaatt ccctcccatc 
001561 aaccttgcat ttcaacatcc gtagattcaa gctccatatt gtttgactga atcgaggcaa 
001621 cgagatcctc aattctcaga ggagcatgcc tagcagcgta ctggaacaaa gcctgaacat 
001681 acaaaaggcg atcaaaccat tggctacaag gcatgaatga gatgatattt tctcagcaaa 
001741 aatgcattct caagtggcca cttactttcg agtggctgtc agcaaaagca cgagcacgat 
001801 tcggctttcc aacaaattga agctcactaa tctccatctt tccatccaca agtttcactc 
001861 tttcatcttt gacagcaaag cgaagaagat tccctggccg caggtttgac tgtacagcca 
001921 tgtaacagta agttaatgct tcaaacaggt tcaggcaagg actgaaatca cagtgcagga 
001981 aggcacttct ggtgcctaat caggataagc acgttacttt ataagcatag cattgtaaca 
002041 cttccagata gggtatacaa tcaacataac cattcattgg tttcatatca acaactaaaa 
002101 gcttggagca ccatgtggaa ggtactctga tgcagatttc cacccttaaa aatcggggaa 
002161 ccatgaaagc atataatcct atgtaattat cacttttttt aatgtaggct gcattacaca 
002221 acagtacctt ctgaatgaat tcattgtcca agctaccaaa gacaactgga ggatcatcag 
002281 aagtagtaag ctttccatcc tcttgcagat ccagcacaat ctgattgtac aggaagaaac 
002341 aaggcacgtg agaagttttg tattggggaa cagaagtagt agcagggcat cagagttgac 
002401 aacatcttcg tctgagagta ttgaagatga taattattaa atatgatgcc cttttgtaaa 
002461 gagaaacaaa atgccccaaa atggagttct atcggcaaaa taattatctt gctagctgca 
002521 acatgaagca aacattgaaa gaatgaaaca tacatgctgc tcacttggga cttgtccctt 
002581 gctatctgtg tcaataacat attgactaca agcctcatct ttccagacca gtgcaagggg 
002641 tgtgatacca gctagataat gtgcatgcct tttaagagaa aagacaacaa acagttagtc 
002701 aatgcagtga tgtaaactgt aaaggcagtt agcagatatg agggcatgtc taacaaagaa 
002761 gacatcatca aaggtagaaa gagaagttac ttgttgtaaa acagcaagcc atctttcaca 
002821 tatggtgtgc ttcctgagta tgctgcttga agaccctgaa gcgtgcactc gtatataggg 
002881 acagcactga atctgtagcg atggtacgtt gatggaggat caccagcagt ggtctccatg 
002941 agcttagaat tcacccaaaa gaacctaaac tcagcggtgc agtcgtacaa ggagtagcct 
003001 ctccaacaga tcatatcaat gatgtaatat gtttcatcag gctgcagcac aagagagacg 
003061 acaacgttat gaatgaacaa gccaaaaacg aaagaaagaa aaggcaggtc aagaaggatg 
003121 gatcaggtgg tagcacctca tgaaagatgc aatcaaggat ggaataggaa cttgctggtc 
003181 cggagatgtc tctctttgat ccatttggaa gagcggaagg gaatcggtgg agaatggatc 
003241 catttcggag cctgctaatg gtgatgccgt tgcaagagac gaccaagcac cgtttcccgg 
003301 caggtctggc aaaaacatgc ctacacatag agaagaattg ttgaggccga tcctttgttg 
003361 aaacttgtag tagtagtagt atactacata cagtttaata agcagtaaaa gtgaaatttg 
003421 caggtt

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ707738 whv3n11n21 777
more... (Total Hit Count: 3 )
/rice/oryzabase