cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK108373     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os01g0695800 ( IRGSP 1.0 )
RAP - Chromosome No. 1
RAP - Location, Length 30,516,224 -  30,517,381  ( - );   1,158(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 30,516,224 -  30,516,966 ( - );   743 (bp)
Exon 2 Location 30,517,236 -  30,517,381 ( - );   146 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os01g0695800 Os01t0695800-01 002142D10 111226 002142D10 17842 LOC_Os01g50100.1 AK108373 24816 AP008207.2 255672756 BAF05877.1 113533494 NC_008394.4 297598437 NM_001050498.1 115439366 NP_001043963.1 115439367


Chromosome: 1 ,  position: 30,516,224 - 30,517,381 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 ctaggattga ttcaagtagc gacgagggag cgataatgga aaacgtcact ggcagcattg 
000061 atttcaataa tgtcagtttc aagtacccat cacgccctga tgttcaaata ttcagtgact 
000121 ttaccttgca cattccttcc caaaaggtat acttccacat tcacctattt gtcttccttt 
000181 ttcctatttc ttgaaactag tgcatgccca aaatttccat cagaaaatta acttgattat 
000241 tgaactattt acataataca actagtaaca tacttcaaaa tagatgcgag tgtgacccat 
000301 ccacttccgt gacatcatat gtgttgatac acaactttac attttatttt ttgcatctca 
000361 gcatttccat gcactgaaat agttatgact aaaccttttc cttccttttc tacagaccat 
000421 agcacttgtt ggagaaagcg gtagtgggaa gtccacgata attgctttat tagagcgttt 
000481 ctatgatcct gattctggta atatctcact agatggagtt gaaattagaa gcttaaaagt 
000541 cagctggttg agggatcaga tggggcttgt aggccaggag ccagtgcttt tcaacgacac 
000601 aatccgtgcc aacataacat acgggaaaca cagtgaggta acagaggaag agatcactgc 
000661 tgtggccaag gcagcaaacg cccatgagtt cgtatcaagc ctgccacaag gatacgacac 
000721 agtggtaggt gagaaagggg tgcaactatc tggtgggcaa aaacagaggg tagcaattgc 
000781 aagggccatc ctaaaggacc ctaagatact gctacttgat gaggcaacca gtgctctaga 
000841 tgcagaatca gaacgtgttg ttcaagatgc attggatcga gtcatggtca acaggactac 
000901 cattgtagtg gcacaccgcc tctccacaat caaaggggct gatatgattg cagtcctcaa 
000961 ggaaggaaaa attgcagaaa aaggaaagca tgaagcacta ttgcggatca aggatggtgc 
001021 atatgcttca cttgtacaac tccgctctaa ttccgagtaa aatgatgtat attttgatgg 
001081 tgtataactt atttagccat aaattctagc tacttgtgat ttgagaagtt gatgctaaac 
001141 tagagggtgt tctttggt

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ871937 whsctal7f18 745
more... (Total Hit Count: 11 )
/rice/oryzabase