cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK243636     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os12g0632000 ( IRGSP 1.0 )
RAP - Chromosome No. 12
RAP - Location, Length 27,208,540 -  27,209,467  ( + ) ;   928(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 27,208,540 -  27,208,761 ( + ) ;   222 (bp)
Exon 2 Location 27,208,875 -  27,209,467 ( + ) ;   593 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 MSU ID cDNA
Accession No		 RNA Nucleotide
Accession No		 RNA
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os12g0632000 Os12t0632000-01 J100087I01 302997 J100087I01 LOC_Os12g43600.1 AK243636 AK243636.1 116013001 BAH01685.1 215769456 NC_008405.2 297613623 NM_001073876.1 115489713 NP_001067344.1 115489714


Chromosome: 12 ,  position: 27,208,540 - 27,209,467 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gtggtctctc agaggtgggt tggcttctcc tccccctccc ggttcggttc ggttcgggtc 
000061 cggttcgatt tcgttttttt ttcttcttcg tggggttggt gggaaagcat ggcggcgccg 
000121 gatgttgagt accgctgctt cgtcggcggc ctcgcctggg ccaccgacga ccgctccctc 
000181 gaagccgcct tctccacctt cggcgagatc ctcgagtcca aggtccgatg gattgattcc 
000241 ctcttctctg tgtttttttg gatgtgattt ggtggtggtg ttcttcagat ctggttgcgt 
000301 agatctgact atgggggttg tggtatgcgg tgcagatcat caacgatcgg gagacgggga 
000361 ggtcgcgcgg gttcgggttc gtgacgttct cgagcgagca ggccatgcgc gacgccatcg 
000421 aggggatgaa cggcaaggag ctcgacggcc gcaacatcac cgtcaacgag gcccagtcgc 
000481 gccgctccgg aggcggaggc ggaggcggct acggccagcg cggcggaggc ggaggctacg 
000541 gtggcggcgg cggctacggt ggtggcggcg gcggtggcta cggccagcgc cgtgaaggcg 
000601 gctacggcgg tggcggcggc tacggtggcg gccgtggcgg cggcggcggc tacggcggtg 
000661 gctacggcag ccgcggcggc ggcaactccg acgggaactg gaggaactga gcggtggggc 
000721 cctcatggcc aagttatcta tctatctaat cgagctacca tcatcatcat ccgatcgtta 
000781 tcatcgttag ttttgtgtgg aactactatc tagtttgtgt tactgtgtgg ttgcccatct 
000841 gtgtttttga tcgcaagaag aaagctcgtc tcgtgtttgc tttgatcaaa tgaaatgaat 
000901 gaatgaatct tagtgtgctc cgctctcg

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BY850881 bast28e01 353
more... (Total Hit Count: 8 )
Hit Wheat ESTs
Acc. No. Clone Name Length
BJ302877 whyd17c16 337
more... (Total Hit Count: 29 )
/rice/oryzabase