cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK242601     Link to RAP-DB ( IRGSP 1.0 / Build5 )
RAP ID Os12g0555600 ( IRGSP 1.0 / Build5 )
RAP - Chromosome No. 12
RAP - Location, Length 22,751,234 -  22,755,607  ( - );   4,374(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 22,751,234 -  22,754,161 ( - );   2,928 (bp)
Exon 2 Location 22,754,414 -  22,755,607 ( - );   1,194 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No
KOME
Clone ID
KOME
Clone Name
Tigr ID cDNA
Accession No
UniProt
Accession No
UniProt Entry
Name
Os12g0555600 Os12t0555600-01 J090014G03 301962 J090014G03 LOC_Os12g36890.1 AK242601 Q2QNS6 CSLD4_ORYSJ


Chromosome: 12 ,  position: 22,751,234 - 22,755,607 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 actcatcgat cccctcctcc attcacatga gagatcctcg agatccctat aatttctccc 
000061 ccaattcgtc gcggccaatc cttcccccga gctcgagctg atcggcgtga gctttttctc 
000121 gccggagttg agctgagccc ggcggttttc gggtgtggat ttgagcttga gctgaagtga 
000181 agtgagcttg tggttttgag gtgatttgtg ggggatgtcg cggcggctgt cgttgccggc 
000241 gggggcgccg gtgacggtgg cggtgtcgcc ggtgcggagc ccggggggtg acgcggtggt 
000301 gaggaggggg agcgggctga cgtcccccgt gccgaggcac tcgctcgggt cgtccaccgc 
000361 cacgctgcag gtgtcgccgg tgaggcggag cggcgggagt aggtacctcg gcgcgtcgag 
000421 ggatggcggc gccgatgaga gcgccgagtt cgtgcactac accgtgcaca tcccgcccac 
000481 gcccgaccgg gcgacggcgt ccgtggcgag cgaggcggag gcggcggcgg aggccgagga 
000541 ggtgcaccgg ccgcagcgga gctacatctc cgggacgata ttcaccgggg ggctcaactg 
000601 cgccacgcgc ggccacgtgc tcaacttctc cggcgagggc ggcgccaccg ccgcctccag 
000661 ggcggcggcg tcggggaaca tgtcgtgcaa gatgcgcggg tgcgacatgc ccgcgttcct 
000721 caacggcggc cgcccgccgt gcgactgcgg gttcatgatc tgcaaggagt gctacgcgga 
000781 gtgcgccgcg ggcaactgcc ccggttgcaa ggaggccttc tccgcgggct ccgacaccga 
000841 cgaatccgac tccgtcaccg acgacgacga cgacgaggcc gtctcctcct ccgaggagag 
000901 ggaccagctg ccgctgacat ccatggcgag gaaattttcc gtggtgcact ccatgaaggt 
000961 ccccggcgcc gccgccaacg gcaacggcaa gccggccgag ttcgaccacg cccgctggct 
001021 cttcgagacc aagggcacct atggctacgg caacgctctc tggcccaagg acggccacgc 
001081 ccatagcggc gccggcttcg tcgccgccga cgagcccccc aacttcggtg cccgctgccg 
001141 ccgccccctc accagaaaaa ccagcgtctc ccaagccatt ctcagcccct acaggtacca 
001201 aatcctcctc aaaatttgaa caatttcaac aaattttacc aaatttgagc aaattggtta 
001261 gcattttgag gtggatttgt ttttgattag gttgaatttt gaacaatttc aacaaaattt 
001321 accaagttgg ttagcatttt gaggtggatt tgtttttgat taggttgaat tttgaacaat 
001381 ttcaacaaat tttaccaaat ttgagcaaat ttgttagcat tttgaggtgg atttgttttt 
001441 gattaggttg ttgattgcga ttcggctggt ggcgctgggg ttcttcctcg cgtggaggat 
001501 tcggcatccg aatccggagg cggtgtggct gtgggcgatg tcggtggcgt gcgaggtgtg 
001561 gttcgccttc tcatggctgc tcgacagcct ccccaagctc tgccccgtcc accgcgccgc 
001621 cgacctcgcc gtcctcgccg agcggttcga gtcgccgacg gcgcgcaacc ccaagggccg 
001681 ctccgacctc cccgggatcg acgtgttcgt caccagcgcc gacccggaga aggagccgcc 
001741 gctggtcacc gccaacacca tcctctccat cctcgccgcg gactaccccg tcgagaagct 
001801 cgcttgctac ctctccgacg acggcggcgc gctgctgtcg ttcgaggcgc tcgccgagac 
001861 ggccagcttc gcgcgcacgt gggtgccatt ctgccgcaag cacggcgtcg agccgcggtg 
001921 ccccgaggcg tatttcggcc agaagaggga cttcctcaag aacaaggtgc gcgtcgactt 
001981 cgtccgcgag aggcggaagg tgaagcgcga gtacgacgag ttcaaggtgc gggtgaactc 
002041 gctccccgag gcgatccggc ggcgctccga cgcgtacaac gccggcgagg aactgcgcgc 
002101 caggaggcgg cagcaggagg aggccgccgc cgcggctgcc gccggcaacg gcgagcttgg 
002161 agcggcggcg gtcgagaccg ccgccgtgaa ggccacgtgg atgtcggacg gctcgcactg 
002221 gccggggacg tggacgtgcc ccgcggcgga ccacgcccgc ggcgaccacg ccgggatcat 
002281 ccaggcgatg ctggcgccgc cgacctcgga gccggtgatg ggaggcgagg cggcggagtg 
002341 cggcgggctg atcgacacca cgggcgtgga cgtccgcctc ccgatgctgg tgtacgtgtc 
002401 gcgggagaag cgcccgggct acgatcacaa caagaaggcc ggcgccatga acgcgctggt 
002461 gcggacgagc gccatcatgt cgaacgggcc cttcatcctc aacctcgact gcgaccacta 
002521 cgtgcacaac tcgtcggcgc tccgggaggg gatgtgcttc atgctcgacc gcggcggcga 
002581 ccgcgtgtgc ttcgtccagt tcccgcagcg gttcgagggc gtcgacccca gcgaccggta 
002641 cgccaaccac aacctcgtct tcttcgacgt gtccatgcgc gccatggacg ggcttcaggg 
002701 ccccatgtac gtcggcaccg gctgcgtctt ccgccgcacc gcgctgtacg gcttcagccc 
002761 gccccgcgcc accgagcacc atggctggct cggccgcagg aagatcaagc tgttcctcac 
002821 caagaagaag agcatgggca agaagacgga cagggccgag gacgacaccg agatgatgct 
002881 gccgccgatc gaggacgacg acggcggcgc cgacattgag gcctcggcta tgctaccgaa 
002941 gcggttcggc gggtcggcga cgttcgtggc gtcgataccc gtggcggagt accagggtcg 
003001 gctgctgcag gacacccccg ggtgccacca cggccgccct gcgggcgcgc tcgctgtgcc 
003061 gcgcgagccg ctcgacgcgg cgacggtggc ggaggccatc ggcgtgatct cctgcttcta 
003121 cgaggagaag acggagtggg ggcggcgcat cgggtggatc tacggctccg tcaccgagga 
003181 cgtggtcacc ggctaccgga tgcacaaccg cgggtggcgc tccgtctact gcgtgacgcc 
003241 gcggcgcgac gcgttccgcg gcacggcgcc gatcaacctc accgaccgcc tccaccaggt 
003301 gctccggtgg gcgacgggct ccgtcgagat cttcttctcc cgcaacaacg ccctcttcgc 
003361 ctcgccgcgg atgaagctgc tgcagcgcgt cgcctacttc aacgccggga tgtacccctt 
003421 cacctccgtg ttcctcctcg cctactgcct cctcccggcc gtctccctct tctccggcaa 
003481 gttcatcgtg cagcgactca gcgccacctt cctcgccttc ctcctcgtca tcaccctcac 
003541 cctctgcctc ctcgccctgc tcgagatcaa gtggtccggg atcacgctcc acgagtggtg 
003601 gcgcaacgag cagttctggg tgatcggcgg caccagcgcg cacccggccg ccgtgctgca 
003661 gggcctactc aaggtgatcg ccggcgtgga catctccttc acgctgacct ccaagccggg 
003721 gaacggcggc ggcgatggcg gggtcggcgg cgaggggaac gacgacgagg cgttcgcgga 
003781 gctgtacgag gtgaggtgga gctacctgat ggtgccgccg gtgacgatca tgatggtgaa 
003841 cgcggtggcg atcgcggtgg cggcggcgag gacgctgtac agcgagttcc cgcagtggag 
003901 caagctgctc ggcggcgcct tcttcagctt ctgggtgctg tgccacctct acccgttcgc 
003961 caagggcctc ctcggccgcc gcggccgcgt gcccaccatc gtcttcgtct ggtcgggcct 
004021 catctccatg atcatctccc tcctctgggt ctacatcaac ccgcccgccg gcgcccggga 
004081 gcgcatcggc ggcggcggat tcagcttccc atagccgaag aagaagaaga agaagaaaga 
004141 agttatttat cagtagtgta gtggtgtcga gttcagtttc ttgaagctct gaactttctg 
004201 aagctcacat gaaggagtgc ttgcttcatg gggcgtgttg tcaaattcag ttcagtaaaa 
004261 gtacttttac cgaagtatta ggtgtgatta agcgattgtt tgtgtatcaa ttaagttact 
004321 tgtgattaat tgatactgat tatgtatcaa atattggaga catgtcatat gatt

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BJ485887 rbah59a20 648
more... (Total Hit Count: 4 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ825608 whatlal18i22 664
more... (Total Hit Count: 29 )
/rice/oryzabase