cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK107199     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os01g0826400 ( IRGSP 1.0 )
RAP - Chromosome No. 1
RAP - Location, Length 37,077,664 -  37,080,228  ( + ) ;   2,565(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 37,077,664 -  37,078,058 ( + ) ;   395 (bp)
Exon 2 Location 37,078,173 -  37,078,376 ( + ) ;   204 (bp)
Exon 3 Location 37,078,574 -  37,079,160 ( + ) ;   587 (bp)
Exon 4 Location 37,079,248 -  37,079,409 ( + ) ;   162 (bp)
Exon 5 Location 37,079,519 -  37,080,228 ( + ) ;   710 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os01g0826400 Os01t0826400-01 002125B01 110050 002125B01 16820 LOC_Os01g61080.1 AK107199 27806 AP008207.2 255672756 BAF06589.1 113534206 NC_008394.4 297598437 NM_001051210.1 115440790 NP_001044675.1 115440791


Chromosome: 1 ,  position: 37,077,664 - 37,080,228 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 caaactctct cttccctcca cccccgcttc ctccttcttc ccgtacgtac acgccggagg 
000061 ccggacagag acacgaaccg cacggcgacg agctgtgaga cgcggcggtt ttggtcgcga 
000121 cctgagggat tccgatgaca acctcgtcgt ccgggagcgt cgagacgtcg gccaattcgc 
000181 ggctggggac gttctcgttc gccagcgcga gcttcacgga cctcctcggg ggaaacgcgg 
000241 gagccggcgg cggaggtgtg tccaggtaca aggccatgac cccgccttcg ctgccgctct 
000301 cgccgccgcc ggtgtcgccg tcgtccttct tcaacagccc gatcggcatg aaccaggccg 
000361 acttcctcgg ctcgccggtg ctcctgacct ccagtgtaag cacgcacgcg aatgggccga 
000421 gctccattaa tggcctaatg ccatgtcatt tctgtacggt ttttcagatg ataatgagaa 
000481 attgagaatt gaaccttgcc ggttttcaga tcttcccgtc gccgacgacg ggcgcattcg 
000541 cgtcgcagca ctttgactgg aggccggagg tggcggcggc gcagagcgcc gatcaaggcg 
000601 gcaaggacga gcagaggaat tcctactccg acttctcgtt tcagacggcg cctgcgagcg 
000661 aggaggccgt gcgaacgacg actttccagc caccggtccc accggcccca ctggtgagtg 
000721 agagcaacca taacgtcagc tgttaccctt tttggagggg tccttcgctg actttgtcca 
000781 aaagaaacta ctcctagcat ctttctttct tactcctagc taaggcattt tcactatttc 
000841 agtttgcaaa ttgcaatagt caaaacccaa actatagaag tagcctctaa acaataacct 
000901 tttctgacag ggggacgagg catacagaag tcagcagcag cagcagccat ggggctacca 
000961 gcagcagcct gcaggcatgg acgcgggtgc caacgcggcg agcttcggtg cggcgccgtt 
001021 ccaggcgacc tcgtcggaga tggcgccaca ggtgcagggt ggcggcgggt acagccagcc 
001081 gcagtcgcag aggcggtcgt cggacgacgg ctacaactgg cgcaagtacg ggcagaagca 
001141 ggtgaagggg agcgagaacc cccgcagcta ctacaagtgc accttcccga actgcccgac 
001201 caagaagaag gtggagcggt cgctcgacgg ccagatcacc gagatcgtgt acaagggcac 
001261 gcacaaccac gccaagccgc agaacacgcg caggaactcc ggctcgtcgg cggcgcaggt 
001321 cctgcagagc ggcggcgaca tgtcggagca ttccttcggg ggcatgtccg gcacagcggc 
001381 gacgcccgag aactcgtcgg cgtcgttcgg tgacgacgag atcagagttg gctcccctcg 
001441 ggccgggaac ggcggcggcg acgagttcga cgacgacgag ccggattcca agagatggtg 
001501 agtgccctgt tcccaaacct cttcgcgcca aattatgttt gttgagataa aacagtgaac 
001561 tgaacatgtt caccataata tcaggaggaa agacggtgac ggcgagggga tctccatggc 
001621 tggcaaccgg acggtgcggg aaccgagggt ggtcgtccaa accatgagcg acatcgacat 
001681 cctcgacgac ggctaccgct ggagaaagta cggccagaag gtggtgaagg gcaacccgaa 
001741 cccaaggtaa ataaagaacc caaaaagtcc atttttcagt tcgtctactg gtgtgatcgc 
001801 gcgtgtgtat ctctcgtact tgtacttatc gtgcgtgctg ctttcgtgtc tgcaggagct 
001861 actacaagtg caccacggcc ggttgccccg tgcggaagca cgtggagcgc gcgtcccacg 
001921 acctgcgcgc cgtgatcacc acctacgagg ggaaacacaa ccacgacgtg cccgccgcgc 
001981 gggggagcgc cgcgctctac cgccccgcgc cgccggcggc ggccgccacc agcagccacc 
002041 cgtacctgcc gaaccagccg ccgcccatgt cctaccagcc cacggggcca cagccgtacg 
002101 cgctgaggcc cgacgggttc ggcggccagg gaccgttcgg cggcgtggtc ggcgggagca 
002161 gcttcggcgg cttctccggg ttcgacgacg ccaggggctc gtacatgagc cagcaccagc 
002221 agcagcagag gcagaacgac gcgatgcacg cctcgagagc caaggaagag cccggagacg 
002281 acatgttctt ccagaactcg ctctactgac tgaaagaatc gtcgtcgtag gaatctcaaa 
002341 gacatgacac gacggaaatt gtagtttagg ggggttttgt acttgtacgt acctaggata 
002401 tactgtagtc tttgatacat ttgtttattt gtttggaggg cccaggaatg cagatggctg 
002461 cagaaaaggg taccgtccct taacactgga gatgggagga aaggatgtac tcctgtagga 
002521 tacacagcaa attttgctct gtaatttttt tcacatagaa aaatg

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BY850832 bast27g02 466
more... (Total Hit Count: 2 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ941672 whchan39m01 702
more... (Total Hit Count: 12 )
/rice/oryzabase