cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK121826     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os12g0170400 ( IRGSP 1.0 )
RAP - Chromosome No. 12
RAP - Location, Length 3,579,419 -  3,581,846  ( + ) ;   2,428(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 3,579,419 -  3,579,469 ( + ) ;   51 (bp)
Exon 2 Location 3,580,217 -  3,581,846 ( + ) ;   1,630 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os12g0170400 Os12t0170400-01 J033099G14 216545 J033099G14 19948 LOC_Os12g07280.1 AK121826 38973 AP008218.2 255669953 BAF29290.1 113648778 NC_008405.2 297613623 NM_001072803.1 115487567 NP_001066271.1 115487568 Q2QX40 ART1_ORYSJ


Chromosome: 12 ,  position: 3,579,419 - 3,581,846 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 ggcgtccatg gcgacgagct gggagtgatt ccccctgctt gatttgattg ggtatgtgat 
000061 ctctgatcag caacttgtaa gcttcttctg ttttggcttg atgctggatt ggaaccatct 
000121 tgctggtgat tttgttttgg cttcttcttg tacagttgac agtttcgttc taggttatta 
000181 tggtttggaa ctttggatgg atataagttt cccctgtttt ctgcgatctt gggaggatag 
000241 agagggtgtt cttggatcta aggcttttcc ttattgttct tgtagaaatt tcttcagggt 
000301 ttacggttaa ctagttaagt ttaggtgaat tgttaggtta ttctgaacta agaaggagac 
000361 ttttggttct taagatatct tgttcctgca gcctgcagta gttgcaaaat tttttctttg 
000421 ttcttaggaa aaaaaaagga tgttggtttc tcctgtcttg tgttagtaat aaattagtga 
000481 ttctgaaaat gatcaaagct ggtagtatct tttaattcgt agcatattcg ttcagagaag 
000541 aaccttgatc aagtaattta tgggaaaaaa aatcgattta aacttcattt tagcattgct 
000601 gactgtgtca gtgaaaagga tggagcagat tgcaaatctt gcatcacttg ataatctagt 
000661 agattactac tactaattag ttcccagttt cttgactttt caaccaactc aaaaataaca 
000721 tcaaatagtt tcttggggga aaaaaaacaa gaacaatctt tgaactggct aacgatcttg 
000781 attcctcttc ctctgcagat ttcagaggcg ccatctcttt tcctaataaa gatcacgcga 
000841 gattattcag aagcttgcaa tggatcgcga ccagatgacg aacacgatgc gcgatcaggc 
000901 tgcgaacctg acctccatga atcctctctt ctacccgttc atggcggatg acgctctcct 
000961 cggcatggcg ccgccgccgc cgcagcagct gctgccgtcg gttagcatcc agcacatgga 
001021 ctggagcccg gacacgatgc tggacaacct caccttcatc gaggagaaga tccggcaggt 
001081 caaggacgtc atccgatcca tggccggccg ccgcgcctcg tcgtcgtcgg cggcgacgcc 
001141 ggagcagcag cttgtcaacg ccgacctgac atgcctcatc gtccagctca tctccaccgc 
001201 cggcagcctc ctcccgtcgc tcaagaactc ctcgttcctc agccgcacca ccccgccgcc 
001261 cgccgccgcg gccggagccg cacaagcggt cagcctcgcc gccggcgaga gctccagctc 
001321 ggctcgtaat aacgagacga acagggaaga tgaggaggag cagatgggta gccccgacta 
001381 cgacgagctc ttcaaggtat ggactaacgg cggcgccatg gacgaatgcg tcggcgctgc 
001441 cggcgacgag caggatgcga gggagaatcc ggcggcggcg gcggaggagg agaagtacga 
001501 ggtgctgcag ctggaggagg acgagatcct ggcgccgcac acgcacttct gcggcatctg 
001561 cggcaagggg ttcaagcgcg acgcgaacct gcggatgcac atgcgcgggc acggcgacga 
001621 gtacaagagc gcggcggcgc tggcgaagcc gccgccgccg ccggaggggg aggagcagcc 
001681 gccgcagccg gagaggaggt actcgtgccc gcacgccggg tgcaagcgga accggatgca 
001741 cgcgagcttc cagccgctga agacgatcct gtgcgtgaag aaccactaca agcggagcca 
001801 ctgcgagaag cgccatgtct gcggccgctg cggcgccaag cgcttctccg tcatggccga 
001861 cctcaagacc cacgagaagc actgcggccg cgaccgctgg ctctgctcct gcggcaccag 
001921 cttctcccgc aaggacaagc tcttcgccca cgtcgccctc ttccagggcc acgcccccgc 
001981 tctcccccct cccccgccgc cgccgacgtc gggtcgccgc cgccacaagc aggaggagcc 
002041 ggagttcacg tggggcggcg gcggcggcaa tgagtttctt gacgtcaaag ggatcgccgg 
002101 cgtcgggtcc ggctccggtg gtggggatga gttcttctcc gcgggaagct tcggcgccat 
002161 ggatttcgga ttcgggcagt tggatgcttc gctcgcgatg ctgctgccat ccgagcaatt 
002221 cgcgggtgat catcaggagg agaatggtga caagtgaagg tgcacatgat gcgtagcgag 
002281 ttgcatatga tcatatatat atatatatat atatatatat gacgtatgta tttcatggtg 
002341 taatagcatt gtgttatcta aagtggaaga agttgttctt cccatcttgt accatcttat 
002401 atgcacttct ttattaagat agttatgc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs  
Acc. No. Clone Name Length
CJ815423 whsct26a19 772 view details
/rice/oryzabase