cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK121189     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os12g0514100 ( IRGSP 1.0 )
RAP - Chromosome No. 12
RAP - Location, Length 20,056,562 -  20,059,610  ( - );   3,049(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 20,056,562 -  20,056,813 ( - );   252 (bp)
Exon 2 Location 20,057,907 -  20,058,063 ( - );   157 (bp)
Exon 3 Location 20,059,520 -  20,059,610 ( - );   91 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os12g0514100 Os12t0514100-01 J023085O07 215908 J023085O07 21016 LOC_Os12g32950.1 AK121189 27453 AP008218.2 255669953 BAF29898.1 113649386 NC_008405.2 297613623 NM_001073411.1 115488783 NP_001066879.1 115488784


Chromosome: 12 ,  position: 20,056,562 - 20,059,610 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 ctgctgcctc tctctctctc ccctccggct tctccgccgc cgcgaacgcc tctcgactcc 
000061 ggcgagttca tcaccggcgt tcacgaggat ggtgagtttg gttagggggg cagagcccct 
000121 tctcaggcct gaaatgtttt taccctcgga ttgtttagga tttcgcgatt caattcgcgc 
000181 tatttttttt ttagttttag ttttattatt tcgtgtgatc tgagaggctg agatgtgtgg 
000241 atgcgtatgt gtggttccgg ggtggagcga ttttggtcga tccgtgggga attgatcggt 
000301 gggggttgcg ttttgaaatg aggggatttg ggccgcggtt tggatatgga tctgcgtgcg 
000361 tgtctgcgac atctgacctc gaattttagc cagggttttg ttgatttctc ccgcttcgtt 
000421 ggggtttcgt atcatccaca ttatggaatt atggaataga gatgatttag gggggaagac 
000481 aggagcggtg atgtctgtcc ttcgattttt tttcctgctt ttggttgatt gctgttgtag 
000541 attttgctgg ataggcacga ttcagggggt ggatctgtgg tttcgtcgat atgtttctga 
000601 gcttagtgtg gtagatttta tttttgcgga gttcagttgt gtgggttgaa ctcatgcagt 
000661 tgtgcagcca atgaatacga tctggtagga aattatttcg attaagcttt tgaaaagaaa 
000721 taaaaattgc actgctgaac cgattataat gaattgaaaa gaaataggaa ttgctgtggc 
000781 atttatacaa ttaagctatg atgtgctcat ctccaaaaaa atgaattata agaaacggat 
000841 gcaatatttc agtaccatat atcggccatg acatgcttat tcctgcaatt ttagatgaga 
000901 aattcatata agccttgaaa agttgaaatc ttagcaggaa atgttgtttg gtgttagaaa 
000961 tgagaaatgc ggagcagtct gttttaagaa aatagggata attctggata taattgggtc 
001021 ctttgttgcc accggtcact tgtcttgagt tgtgggctcg tacttattac tgaattctgt 
001081 atttctgatg agtgctacaa tgatatatat aatataataa tcagtgttct ccttgggttt 
001141 agttattttt tctatggtga gaattgtagt tgttgaacta cttatttata tatatttgtt 
001201 tctaattaag acaattgtgg tcttcaacag ctcctttggg tcattgagta gttatgttag 
001261 agggaaatga taaaatttat tttgttttat tagtaagcat tttcaggggt agcttaccag 
001321 atactctgaa gttttatcat tacttcatta gtaatgatag aagtgatact aagtttgatc 
001381 tgacatcatt cagctgttgt cgtttcctcc tacgggataa tgtcactacc tttttatgtt 
001441 atttccttat ggttagcaga atgcaaatac gttctgtcct tatgttatat ttgtccactt 
001501 caagcaattt ctttttactg tatcctaaac tatttcattg cattcagact acctcaaggc 
001561 gtcttgctga caggaagagc gcaaagttcc agaagaatat cacgaagagg ggttcagtgc 
001621 ctgagactac tgtgaagaag gggaatgact accctgttgg acccatggtg cttgggttct 
001681 tcatttttgt cgtcattgga tcatgtaagc tttggccctt cactttccta ttcctgtctg 
001741 tttgatattt cagtatccct tgtggtgtgg ttcgcaggaa tgcacatgca caaaatagta 
001801 tatatgcatc ttcagcttta tgaaatcaat ctgactagct ttatgactgc tgagttagca 
001861 ttttgcactg aaggcctcct gtaacattta cttaccacta ggttgacttt gtacctcctt 
001921 aggaaaggtt ctcttttcca ctgtccatgt tagctgtctg acttgttgaa caagatattt 
001981 cttatcactc ataagtttgt ggttgaggtt ttccaaacat ggttggccaa ggtgtctttt 
002041 cgccgctaga tggctggata tttttcattt gatagtgcat tgtaaacatg ttggttgttg 
002101 aaccatatat agtgacatat ttctgaactt tcttgtagtg ttaaccacca taaaatctgg 
002161 agtattatcc atgatgaata gaaagtacat tcattcaggg atgttgtttg tttttatatg 
002221 ttaaatatgt ggcctgtgct taaggaaatg taaactgtga ctactatcac atttacaatg 
002281 tgttagaact gtcaattcaa caaattaatt tcctgagtaa tgcctatttc ctttcctgcc 
002341 atggtccaaa tgttaaattg ttaataccct ctgcaatttt tcaagccacc atctaaaata 
002401 taatggaaaa ttgagctttt tgcttaagtt cctcctaaga tacatcaatt attctcagct 
002461 ttcacttccc atatttccca atacagtata tccaaagaac atatgtattg attgttgata 
002521 acagttcatt ttgtacaaag tccttttctg gcctacatgc tataacagtt gaaattagga 
002581 aatgtaaagc tgcttctctc ttgtgacttt tcacttacat gtttccctat tctgtgtttc 
002641 agtagaattc tgtcatactt ttgcttcata cacgtgcctg ttctgtctat ccgtgtacaa 
002701 tatgcaacac aaacttcatt tatcaactct gtgttcctta caaagttgtc aaaaaacgga 
002761 tggaaatgac agtctctaac atttggttgt cttgcagcct tgttccagat aatcaggacg 
002821 gcaactagtg gcgggatggc ttaaattgga gctaaattca gttatttatg ctgtgtctga 
002881 gagagaggct gtacctgtac tttgtagtga agtttgttcc tggatgatat cgtgtagagg 
002941 gtccatgttg tgtccgtttg cattttacta aatctaaact agatgttggt acctgaatct 
003001 tacagacttt aaacttaaat ggatataatt gaactttgat ctggagact

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK249812 FLbaf58f12 657
more... (Total Hit Count: 4 )
Hit Wheat ESTs
Acc. No. Clone Name Length
BJ224831 whdl1h07 490
more... (Total Hit Count: 132 )
/rice/oryzabase