cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK105835     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os12g0570000 ( IRGSP 1.0 )
RAP - Chromosome No. 12
RAP - Location, Length 23,616,604 -  23,618,586  ( - );   1,983(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 23,616,604 -  23,618,132 ( - );   1,529 (bp)
Exon 2 Location 23,618,228 -  23,618,586 ( - );   359 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 UniProt
Accession No		 UniProt Entry
Name
Os12g0570000 Os12t0570000-01 108684 001203E11 16033 LOC_Os12g38210.1 AK105835 29392 Q0IMG9 SL11_ORYSJ
Os12g0570000 Os12t0570000-01 108684 001203E11 16033 LOC_Os12g38210.2 AK105835 29392 Q0IMG9 SL11_ORYSJ


Chromosome: 12 ,  position: 23,616,604 - 23,618,586 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 tactatctgt atatgacaag aactatgacc caagtgcaga actggctatt cttggaagat 
000061 tgtcagaaaa gctacacttg atgacaatca ccgatctcac gcaagaatca ctcgccttac 
000121 atgagatggt cgcatccggc ggtggtcagg acccaggaga acacattgag agaatgtcaa 
000181 tgctactgaa gaagattaag gattttgtgc aaacacagaa ccctgacatg gggcctccta 
000241 tggcttccag ggtattggat tcaaatgggg attcaaggcc tataaccatt cctgacgagt 
000301 tccgatgtcc aatttctctt gagctgatga aggatcctgt tatagtgtct acagggcagg 
000361 tagcaatctc tacctcttta tttttaagac ccaaagcaca atgcaactaa aatagttatt 
000421 ttagtataaa cattttttat ttgttaattt gtagacatat gagcgggcat gcattgagaa 
000481 atggatagca tcaggccatc atacctgccc aaccacgcaa cagaagatgt caacctcagc 
000541 attgacgcca aactatgtcc ttagaagtct catttcccag tggtgtgaaa ccaatgggat 
000601 ggagccacca aagcgctcaa cccagcctaa caagcctacg cctgcatgct cttcgagtga 
000661 acgtgctaac atcgatgctc tgctatctaa gttatgctct ccagacactg aggagcagag 
000721 atcagctgct gcagagcttc gcctccttgc aaagcggaat gcaaacaacc ggatttgcat 
000781 tgctgaggca ggtgccattc ccttgctatt gagtctgctg tcctcatctg acctacggac 
000841 tcaagaacat gcagttactg cccttctgaa cctctccata catgaggaca ataaggcaag 
000901 catcatatca tctggtgctg tcccaagcat agtccatgtt ctgaagaatg gcagcatgga 
000961 ggcacgggag aatgctgcgg ccacactttt tagtctctca gtgattgatg aatataaagt 
001021 gacaattgga gggatggggg ctatccctgc gcttgtagtg ctgttaggcg agggtagcca 
001081 gcgggggaag aaggatgcag cagcagctct cttcaacttg tgtatatacc aagggaacaa 
001141 gggacgagcg attcgagctg gccttgtgcc actcatcatg gggctggtga ccaaccccac 
001201 aggagcgctc atggatgagg ctatggcaat actctccata ctatccagcc accctgaggg 
001261 caaggcagcg attggggcgg cagagcctgt ccctgtgctt gtggagatga tcggaagcgg 
001321 aaccccgaga aatcgagaga atgctgcggc tgtcatgcta catctgtgca gtggagagca 
001381 ccatcttgtg catttagctc gtgcgcagga gtgcgggatc atggtcccgt tgcgggagct 
001441 ggctttgaac ggcaccgata gggggaagag gaaggctgtg cagctgctcg agcggatgag 
001501 cagattccta gtccagcaac aagaggaaca ggagtcccag tcgcaagcct ccgcgcaggt 
001561 ccctcctcag gccacccctg agcaggtccc ggaaaatgac atccctgaac aattggacag 
001621 cccagcgtct caatacccta tggttgtatg aactcgatga tgagcgagtc atcgtcgcaa 
001681 tcctatcaaa tgtcggattg agtagcatcc tggtcacttt gcattctgct catgattcat 
001741 ggcatgccga ccaattgagg tttttccaca agcttgaact ataaggtttc catgcttgtg 
001801 tgctgaaact cccaggttgt gagaatttgt ttaggcagcc caggatgttg agatagatgt 
001861 gtacagtttc ttaaacatgc agctgctata tgtagacaac ataatgcaag gttttcccat 
001921 gtatatcctg aagactgtaa taccatatgt aaaagagaag tttcaaatgc ggatttgagc 
001981 agt

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AV835270 bah29i22 626
more... (Total Hit Count: 2 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ719896 whvd5o22 816
more... (Total Hit Count: 19 )
/rice/oryzabase