cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK073627     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os12g0589100 ( IRGSP 1.0 )
RAP - Chromosome No. 12
RAP - Location, Length 24,785,363 -  24,788,092  ( - );   2,730(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 24,785,363 -  24,785,700 ( - );   338 (bp)
Exon 2 Location 24,786,189 -  24,786,247 ( - );   59 (bp)
Exon 3 Location 24,786,675 -  24,786,824 ( - );   150 (bp)
Exon 4 Location 24,786,930 -  24,787,022 ( - );   93 (bp)
Exon 5 Location 24,787,168 -  24,787,278 ( - );   111 (bp)
Exon 6 Location 24,787,835 -  24,788,092 ( - );   258 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os12g0589100 Os12t0589100-01 209787 J033051K07 8154 LOC_Os12g39860.1 AK073627 41372 AP008218.2 255669953 BAF30183.1 113649671 NC_008405.2 297613623 NM_001073696.1 115489353 NP_001067164.1 115489354
Os12g0589100 Os12t0589100-01 209787 J033051K07 8154 LOC_Os12g39860.2 AK073627 41372 AP008218.2 255669953 BAF30183.1 113649671 NC_008405.2 297613623 NM_001073696.1 115489353 NP_001067164.1 115489354


Chromosome: 12 ,  position: 24,785,363 - 24,788,092 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 agatgacctc gccgccgccg ccgccgtcgt cgttgctccg ccgcctcccg accacgcgct 
000061 gctgctgctt tgcctccgcg tcgagcggct ggagcgcgag tgcgagcgtg cggctcggat 
000121 ccctcggcgg gaagcagcgg cgggggcatc gcggcgtggc ggtgatggcg gcggcggcgg 
000181 cagggggagg aggcttcgag gcgcgcgtgg cgcggatcgc gtccaccatc cgcgtcatcc 
000241 ccgacttccc caagccaggt ctggtgttcc gcccccacct ccctcgctct ctcccgcttt 
000301 ttgcttcggc catgtgaaat attcatctcg gatttcacga gagtgtagca gctctgcgct 
000361 gggatattta ttcatcgtcg tctaaagcac gcagattgtg tggttgtact tagggttaaa 
000421 cagtagttag ttcgtaactg agtatgaact gtctgagtgg agtaattaac aatgtttttt 
000481 ttcctggttt aatagattat atatagatct ttatttatcc aagtggaggt tttgtcctgc 
000541 tgcttgtttg ctagttagct tagttttgtg cgatgccctt tttttttgtt ctctctagac 
000601 ggtcatacat tgattttctc tatggtgggt ggggtgttgt atggaacttg ggttagtgtt 
000661 atgttggcca gaatgctttt aaaatgacat gttagttttt caacatagct atagaaataa 
000721 aaatgaaaaa tgcgctacat ttttatgtgt aatatatttt tcatgttttc agatataaaa 
000781 taaaaacctt tcttctttct gtttctttat gtagggatta tgtttcaaga tatcacaaca 
000841 atgcttctca agccagatgc atttcgtgac acgatcgagc tcttcgttga gcgatacaag 
000901 gacaaaggga tcactgtaat tgctggtaat gtaaaattaa gtgctacttc ttttgtgaca 
000961 ttacatgcat tcatggttaa aaagttagaa ttataaatga tgcaactgag atgcacatat 
001021 attctgttgt acattttctt ttcataattt ccctcgttgt gaaatatcag gtgttgaagc 
001081 tagaggattc atttttggtc cgcccattgc tttagcacta ggtgcaaaat ttgttccatt 
001141 gaggaagcca aaaaagttac ctggtatgta ctaaactttt tgttatttag catacattgc 
001201 ctccagttat tgaacaacta tgcctttgcc taagagatgt ggtggctaat cttacatgtt 
001261 tatactaggt gaggtgatct cggaagaata ttctttggaa tatggtacag ataaaataga 
001321 aatgcatgta ggagctgtgg agccaaatgg ccgggccgtt gttgttgatg atctaatcgc 
001381 tacaggtgga accttatctg cagccgttaa acttattggt aaggtcctgt ttaagctttg 
001441 tttttgtagt ttgaacacta tagataatgt cctaaattca gctacttaaa ttttataaga 
001501 catgctattc ataaaaagtc cccttttctt gagctacaaa atagatatag tttatgtccg 
001561 gtccattcga tttgtacttt cgtacttgta gatttgaaaa ccatatgact ccaatactta 
001621 ttttccaaac tttgagataa attcgctgta gtgcatatat atggagttta gggaattgat 
001681 gtttcgaagg acttatgttt atttagctat gctgttcatg ttttctttgt tttttttaat 
001741 atatttgaat ggaatatgcc ttaacattct gaatatactt ttgggattta ttcctatgat 
001801 ttgtgatatg gtttacttaa ctcaattaac cttcactctt tgtagagcgt gctggagcag 
001861 aggttgttga gtgcgcatgt gtcattgaac taccagaact gaaggtataa ttcttttgac 
001921 gcatcaatat ctctgattct cttatacaga acagtgtatt aagttagcat gtgggtatgt 
001981 gttgggtaat tgatctgcat gctcaagcaa agaaaagaaa aagaagcttt agttagatgt 
002041 gaataaggag atttttcatg gtagtgcttg actgttatat agtcgtcgac tgtaggaagt 
002101 ttccttttgg ctgtacatta ttttttgggt aatactcatg caaagattaa cattaaattt 
002161 gaaattagct acaagaaagg aagtattaac aaaccatgac tagaaactca ttgaaaagac 
002221 tttggaataa ttcaaaagat gtgctcttca tgatcgaaat ctcattttta aaaaactttg 
002281 ggattatctg catttgtcac tgccaggaat ttagatcaag attaaaactt tggttagaaa 
002341 taacatggct taagatgaca tccagtgctc taactatgcc atgttttttc agggtcggga 
002401 caagctgggg aacaagccag tttttgtcct tgtgaaggca gactaagcgg aatgaaacaa 
002461 ctaagggcct ctcaagttgt ccctattaat atcagtgtcc ttctcgaagc atgttggaag 
002521 caactaagat atcggtcgtg acaatattag cttgttctat ccagtgctct gcaataaaag 
002581 tctcatcttt aaatttgtag gcacatgagt tatttgggaa ttcggacttg aatgatcctt 
002641 gtaatacatc aaaacacggc ataatttttt ttaaaggagt gccaattatt catggggaat 
002701 gagaatcacc tattttggag tttgttgttc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AV915970 bags16o14 680
more... (Total Hit Count: 16 )
Hit Wheat ESTs
Acc. No. Clone Name Length
BJ233278 whe3p15 683
more... (Total Hit Count: 29 )
/rice/oryzabase