cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK071648     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os12g0636800 ( IRGSP 1.0 )
RAP - Chromosome No. 12
RAP - Location, Length 27,443,742 -  27,447,023  ( - );   3,282(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 27,443,742 -  27,444,068 ( - );   327 (bp)
Exon 2 Location 27,444,156 -  27,444,244 ( - );   89 (bp)
Exon 3 Location 27,446,192 -  27,446,255 ( - );   64 (bp)
Exon 4 Location 27,446,380 -  27,446,482 ( - );   103 (bp)
Exon 5 Location 27,446,676 -  27,446,779 ( - );   104 (bp)
Exon 6 Location 27,446,884 -  27,447,023 ( - );   140 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os12g0636800 Os12t0636800-01 207541 J023106H02 6702 LOC_Os12g44000.1 AK071648 33964 AP008218.2 255669953 BAF30386.1 113649874 NC_008405.2 297613623 NM_001073899.1 115489759 NP_001067367.1 115489760
Os12g0636800 Os12t0636800-01 207541 J023106H02 6702 LOC_Os12g44000.2 AK071648 33964 AP008218.2 255669953 BAF30386.1 113649874 NC_008405.2 297613623 NM_001073899.1 115489759 NP_001067367.1 115489760
Os12g0636800 Os12t0636800-01 207541 J023106H02 6702 LOC_Os12g44000.3 AK071648 33964 AP008218.2 255669953 BAF30386.1 113649874 NC_008405.2 297613623 NM_001073899.1 115489759 NP_001067367.1 115489760


Chromosome: 12 ,  position: 27,443,742 - 27,447,023 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gcgcccttcc tcccctcttc ttctccttcg actttgttcg actcccctcc ttcccggcag 
000061 aggagaggag aggagaggag aggactcatc catcatcatc aatcaacgcc atgacgagct 
000121 cctcatctcc ttcccgaaag gtattattct actccttcct ctctctcccc aatccgtctg 
000181 attctcgcta tctgtgaacg ttttggtcta atttcccccc cttttttttt gtacctgcgc 
000241 gcaggcgctg agcaagatcg cttgcaatcg gctgcagaag gagctcgccg agtggcaggt 
000301 cagccctccc tccgggttca agtacagggt ctccgataac ctccaaaggt cgtcatcttg 
000361 tcttctactg gttgatttct tgtttcttct cctgtggatg aaccgcggga tcccatctta 
000421 caattgattc cttttctttt cttgactgta tatgttcttg attttgggga tttttggtgg 
000481 gtttttatta ttagtattgt tgttaatctg tggagatgga ttcgtacgat tcgcctaata 
000541 ggtgggtaat cgaggtcacc ggagcggcgg gcacgctcta cgccggcgag acataccagc 
000601 tgcaggtcga cttccctgag cattatccca tggaggcgcc tcaggtgagc tttcttttca 
000661 caacagatta ctttctcata tagaaacctt taattaatcc tttcgtttct tctcatctgt 
000721 tccctgcatt cgatttggtt gcaaactaat ttaactcttt cattccaggt catttttctc 
000781 aacccggcgc cgatgcatcc acacatttac agcaacgggc acatctgttt aggtaaagtt 
000841 gttccttatc atctcaaaaa taaaataaaa taagttgttc ctcatgtcgg cctcttctct 
000901 ctagcagata tttgtttagg cttccatgtt gattaactgc atgttgtatg agaatgttct 
000961 ttgcctaacc tgatgttcta tctagctgtc agttaggtgc taagattcca tctgttaggg 
001021 gaaagccacc acctttgcca agtgtgcttt tccacttcct agagtagctg tacaattgag 
001081 atgccccgac ttaacttttc attctatttc tcttttacta tgttagtaga caatcttgat 
001141 gggatcacga aattcacgac cttgttgtaa acattgtttc ttgcttctgc tttctaagtt 
001201 ttcttattat ctagatattg gaggtttgtc ttgtttcctc gctattaata cagctgtcac 
001261 cagtgcttct acttctatga ttgttagcca tcagagggaa gctttaaaat tatgtagttt 
001321 atttggtact gaatcctgag tgataacacc tttgcttctt ttcttgtcct caattctcct 
001381 tccacctctg aaatttgatc tatataagct gtttacgtaa cttcttatca cccttttgtc 
001441 ttcttgtaca attagctacg agtctaatgg tatgatagca catatgtaca gccttccttt 
001501 ttggttcctt tcagagtggc atgcatttgc tttttttggt aattcgttct agtaagtatt 
001561 tcttgtttaa atcttatctt gtgtagtgat cacacagagt tgcagttgtg cttgaaaggc 
001621 tttgatttgt gatgcagaga atacaaacaa gatttatact tctatctgtt atttcttttg 
001681 cctgatatat atatatttct tgattctagt tgagtgccaa agttagtaaa aatataatac 
001741 taatgggaat taaaacattc cttaccttga actgtttgaa gggagttagg atgcatgtca 
001801 gttaggttcg tgtctgggtg gtcgagggtg ttttcttaaa tgtcctggaa aggtaatgag 
001861 gattagacat ctatacagta gtacaaacta ggatgatagc atgcttctat tcatatttta 
001921 aactattgtg caaatataat gttggccctc atgtttccaa tataaccttg ccatttccac 
001981 tttactaaaa tagctgcaaa tgcattggaa caatagattg ttatagtttg gcagcttatg 
002041 aagtgagaca cttaaaagta gatgtgctga aaagtttgtt ctttcatcat tgcccttcac 
002101 atggaaacat atggtatccg tgtcttgtct ctgttggatg cataaattat gttaaatggt 
002161 caaatcacaa caacttaaag caaacaagct attgtataat tagttgttgc caaatttgag 
002221 ctgttttcag tagacttgtc tacctgtatg caataacata gcacttatat cctttggcaa 
002281 acggaggtag tcaaatctat tttttgtccc ccaagactcg gcgacatgct ttcatgtttt 
002341 aagttatata tacaacaatt agcatcttga atctgttact tcgactatct aactagtcta 
002401 gatgagctgc ttgagccaaa gggttgttaa ttttggagca actttactgc tcagctggta 
002461 gttgagtgtg tgtagtattg aatttgagta acttggatca ctgattctga aatacagtgc 
002521 agcagcagct gaaaatcatt cattcaggaa aatatgtttc tgagacacct taatctctga 
002581 ctcgtgattt catctttgag catttgatct gtcctttttt ttttaatgtt ccttctccat 
002641 agaaacagga ctacttcttg atccttgtaa tgatgatttc tctgtgattg tgaaccaaaa 
002701 gagagatgag atacagtttt tatgcataaa tataatggcc attaagaata acagcttgct 
002761 gctggtcata tatctgcaga tatactgtat gattcttggt cacctgcaat gactgtcagt 
002821 tcggtctgca tcagcatttt gtcaatgttg tcaagttcac cagcaaaggt tattatatat 
002881 aactaacacc cttcccattt tctttcgctg accaaaaaca ttaaaaggta tcttgctata 
002941 atgtggtgtt tgcagcaacg ccctcaagac aatgaccgct atgttaggaa ttgccgcaat 
003001 gggaggtcgc cgaaggagac cagatggtgg ttccatgatg acaaagtgta agaggaacta 
003061 gttggcactt ttgccattca gtaatcgtaa taccttgaaa tctcttgcaa ggggaaaatg 
003121 agatgaatgt aggcttactg ttaagcatca ctctattgga ccaccaagct taactgctgg 
003181 gttggtttgt acatgagctg cctgcacaca tgtcaagtca tgaatataat attaccataa 
003241 atgattatac agaataagca agtgtaccat gctgattctc tg

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK252722 FLbaf166f09 835
more... (Total Hit Count: 6 )
Hit Wheat ESTs
Acc. No. Clone Name Length
BJ233043 whe3b17 615
more... (Total Hit Count: 100 )
/rice/oryzabase