cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK069697     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os12g0586100 ( IRGSP 1.0 )
RAP - Chromosome No. 12
RAP - Location, Length 24,607,502 -  24,610,305  ( - );   2,804(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 24,607,502 -  24,608,135 ( - );   634 (bp)
Exon 2 Location 24,608,222 -  24,608,320 ( - );   99 (bp)
Exon 3 Location 24,608,445 -  24,608,549 ( - );   105 (bp)
Exon 4 Location 24,608,778 -  24,608,870 ( - );   93 (bp)
Exon 5 Location 24,609,115 -  24,609,207 ( - );   93 (bp)
Exon 6 Location 24,609,323 -  24,609,376 ( - );   54 (bp)
Exon 7 Location 24,609,493 -  24,609,594 ( - );   102 (bp)
Exon 8 Location 24,609,735 -  24,609,809 ( - );   75 (bp)
Exon 9 Location 24,609,922 -  24,610,305 ( - );   384 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os12g0586100 Os12t0586100-01 J023028J06 205432 J023028J06 4899 LOC_Os12g39630.1 AK069697 24682 AP008218.2 255669953 BAF30174.1 113649662 NC_008405.2 297613623 NM_001073687.1 115489335 NP_001067155.1 115489336 Q75V57 SAPK9_ORYSJ


Chromosome: 12 ,  position: 24,607,502 - 24,610,305 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gcgggagcaa aaggagaaaa aaaaacaaca gcgagaaaaa aaaaatcaag aacacgagca 
000061 agcgagaggg gaagagagag agagagagag agagagagag agagagatca cgagatcgga 
000121 ggaggaggag gaggaagaag aggggaggag gtggcgtgtt gagtcggatc gaggtttgcg 
000181 tttgtgttcg tttggtcgcc ggcggaagcg atggagaggg cggcggcggg gccgctgggg 
000241 atggagatgc cgataatgca cgacggtgac aggtacgagc tggtgaagga gatcgggtcg 
000301 gggaacttcg gcgtcgcccg cctcatgcgc aaccgcgcct ccggcgacct cgtcgccgtc 
000361 aagtacatcg accgcggcga gaaggttctc tttccttcct ctcttttctt tgctgcgagc 
000421 ttagcttagc aaaattgaga agaaaaaaaa gggtaaaatc aaagctggtt tgatcgaccg 
000481 tggaattcga ctgcagattg acgagaacgt gcagagggag atcatcaacc acaggtcgct 
000541 gcgccacccc aacatcatcc gattcaagga ggtgaccatg acacgattct cctcttcctc 
000601 ctctcttctt tggagatcat gctgattgct gatgctgaat gatgtaaaag gacacctttg 
000661 tttgttcctt cttgtttcgt ttgcaattcc gactctgacg aatcttttca ggttattctg 
000721 acgccgacgc atctcgcgat cgtcatggag tacgcctccg gcggcgagct cttcgagcgc 
000781 atctgcagcg ccggccgctt cagcgaggac gaggtcgata tcactgtcct gatacactat 
000841 gatcatgtct atttctttca ccaataattg tgtagtatct gtattgtact gttgtattgg 
000901 ctaactctga acttttggtg tactttcagg ctcgtttctt cttccagcag ctgatatctg 
000961 gagttagcta ctgccattcc atggtacagt atcattttga tttcaaagtt accgtgtgat 
001021 tttcgcttgt ctataactat aagcggtttg ctgcattgag ctgaagcgat tttgttaatg 
001081 tgtttttgca ttgttcagca agtatgccat cgtgacttaa agctggagaa cactctgcta 
001141 gatggaagta ctgctcctcg cttgaagata tgtgactttg gttactcgaa ggtactaatg 
001201 tttttctatt tatttttgct atgcttttag ttgggattac tttgatcatt tggcaatact 
001261 atgtgatact gatttgatga tctgaaggta gatagtatcc acaagacatt tagggtgcac 
001321 aatgtggctt aaattacttt ctgtagtagt gaaaagaaga gagaactttc gctagatttt 
001381 tctcgatgtg attgctgcct ggataatatt gtactgttgc tttctgattt tgcagtcatc 
001441 ggttcttcat tcacaaccaa aatcaacagt tggaactcca gcttatattg ctccagaagt 
001501 tttgctcaag aaagaatacg atggaaaggt attatctatc ccctttgtgc tttaaaagtt 
001561 gccatcctgc atgcaaagat acactgatac cagcagctgc ccaacttcta tgccttttgc 
001621 tcgacaatag aagctgccat tgtgttgtaa aggtgttgat ccatgtttca atggcatggg 
001681 tagtgtatgg tcttgtgaag taaccctttt aatgcattag ttagctcaat ccctaataat 
001741 ttgtctttgg atggagattg ccgatgtttg gtcatgcggt gtgacgctct acgtgatgtt 
001801 ggttggcgca taccctttcg aggatcctga agatcccaag aacttcagaa agacaattca 
001861 ggtatccttg ccaaccattc agctttgcag caccacaatt tacagttata atcagccagc 
001921 taaatagtaa tgcctaaata ctttttttag ataaataatg tctaaatact gatctcaatt 
001981 tgcagaaaat attgggtgtt cagtactcaa ttccagacta tgtccacata tctccggagt 
002041 gccgcgatct cattacgagg atttttgttg gcaacccagc tagtgtgagt accaattcta 
002101 ttcctgccac acaatcttca attattcagc tctgatgtga gacaacatat gcaatcattt 
002161 gctcttgcag aggatcacca tgcctgagat aaagaaccac ccatggttca tgaagaacat 
002221 cccggctgac ctcatggatg atggcatggt tagcaatcag tacgaggagc ctgaccagcc 
002281 gatgcagaat atgaacgaga tcatgcagat actggcagaa gcaacaattc cagcagcagg 
002341 caccagtgga atcaaccagt tcttgactga cagccttgac ctcgacgacg acatggagga 
002401 tatggactcg gaccttgacc ttgacattga gagcagcgga gagatcgtat atgccatgta 
002461 atcatctcaa catttgcaat gaaactgcac tgaaaatcag cttgtttcag agcaggtaga 
002521 gctccagaag agatctgtgt tcaggctact aggaagcagg ctctgctgcc tattagttct 
002581 tgagtctgaa tttctgatga accatactgc agctgagttg cagcagattg tgtagtatgt 
002641 aattatgtat gttgtgccaa aaatttagca ccggatgata tcatgcaaga ctgtttcttg 
002701 ggaacactga gaaatgagaa gcattgtatg gaacctagtt ctgtattgta ttaaacagag 
002761 agacagaaga gatgtattgg ttaatgtatt tgctatgtgt atgt

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AV940474 bah27e19 648
more... (Total Hit Count: 19 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ907829 whthkles8j05 721
more... (Total Hit Count: 72 )
/rice/oryzabase