cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK069105     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os12g0210200 ( IRGSP 1.0 )
RAP - Chromosome No. 12
RAP - Location, Length 5,763,985 -  5,767,528  ( + ) ;   3,544(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 5,763,985 -  5,764,120 ( + ) ;   136 (bp)
Exon 2 Location 5,764,832 -  5,764,873 ( + ) ;   42 (bp)
Exon 3 Location 5,765,337 -  5,765,422 ( + ) ;   86 (bp)
Exon 4 Location 5,765,515 -  5,765,586 ( + ) ;   72 (bp)
Exon 5 Location 5,765,802 -  5,765,855 ( + ) ;   54 (bp)
Exon 6 Location 5,765,957 -  5,766,032 ( + ) ;   76 (bp)
Exon 7 Location 5,766,272 -  5,766,333 ( + ) ;   62 (bp)
Exon 8 Location 5,766,626 -  5,766,685 ( + ) ;   60 (bp)
Exon 9 Location 5,766,800 -  5,766,936 ( + ) ;   137 (bp)
Exon 10 Location 5,767,075 -  5,767,528 ( + ) ;   454 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os12g0210200 Os12t0210200-01 204794 J023004I03 4324 LOC_Os12g10720.1 AK069105 16129 AP008218.2 255669953 BAF29417.1 113648905 NC_008405.2 297613623 NM_001072930.1 115487821 NP_001066398.1 115487822
Os12g0210200 Os12t0210200-01 204794 J023004I03 4324 LOC_Os12g10720.2 AK069105 16129 AP008218.2 255669953 BAF29417.1 113648905 NC_008405.2 297613623 NM_001072930.1 115487821 NP_001066398.1 115487822
Os12g0210200 Os12t0210200-01 204794 J023004I03 4324 LOC_Os12g10720.3 AK069105 16129 AP008218.2 255669953 BAF29417.1 113648905 NC_008405.2 297613623 NM_001072930.1 115487821 NP_001066398.1 115487822


Chromosome: 12 ,  position: 5,763,985 - 5,767,528 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gtcccctaca cacctacccg aggaagagga ggaggtgggg tggccatggc ggcggcggag 
000061 aagacgaagc ccgttcttta cagcgagtgg atgagctcgt gctcctacag ggtccggatc 
000121 gccctcaacc tcaaaggtaa ccagcgagac cagtggccgc gtctactgct tgcttcttgg 
000181 atggtggatt ccgttccacg ccctcggggg aggtggggat aatgtggccc ggtttcttgg 
000241 tttgattgga ttgggggaaa ttgatgttgt tattagaaga actcttaggt agtttagagg 
000301 attggaggaa tgcctaggat tggatggatt gggtgcttca aacctgcaac tgcaagttac 
000361 acgtgtgtct cggccaaggg gggaaaagag agaaattcat ttcgttgatt attaaagatt 
000421 cactagctag tgggtttcag cactagtatt atgtcgacta ctagcaatat gatgcggttc 
000481 gtgtataagt tcttcagtct gacgagaact cgctgttgtg ttggctaggt agcttgtcag 
000541 caatttacca gttgtatatg gacaattttt tttcgacgtg gagggatatg tggattgcag 
000601 ttattagatt agttctttgc aagctacggg attcaggagt tactgctgaa acttgaatga 
000661 tttactctgt ggttgttgtt ttggagctac caaataacct agtgatcgat tggaagtttg 
000721 tggtggttga ggttgtgcgt tcgttcaatg cccccattct ccttttagac gtgcgtagat 
000781 agatcttcct gcatttccat aatatatgcc tttttaatgc taattgaact atttctttgt 
000841 aatgaaggta ttgattatga gtacagggca gtgacacggg gtgatccagg tcagtaatat 
000901 aaatcttcta tgtcacaatg ttcagctcat tggctctctg aatatgatat gtgatagcaa 
000961 ggaaatggta actattattt cgccgggctg gcgtgaagag ccagccgaga tttattaaga 
001021 gaaaaaggga gaataagttg caagctacag caaagaacta catgccggca aagccagcaa 
001081 cacactttta catggctgcc tgccgctgcg tcaatcgcga gacgacacct cccggcagcg 
001141 agccgggaat attatcataa ctattatcat aactgatata tagattgata gttcattaat 
001201 gtcagaaata tatgttacct agtaatattt ctaagtgtct cactaattca ccacctaaaa 
001261 actatttaaa aatttcaaac aaaatgaaat gtgacacttt gtattgttac tcatgcatta 
001321 ctttgaccgt tctcaatgtt accatgctgt agattatggg aagatcaatc caattaagta 
001381 tgtgccagca ttagtagatg gggatttcac tatttctgat tctctagcaa tcatattggt 
001441 atgttgtggt ttttcaggac atagttaatc ttttttttta attcatatct ctaacattag 
001501 tgactacaag tcttgctttc tgttgagcag tatcttgaag acaaatatcc ccagcatcct 
001561 cttttacctc aagatctaaa aaagaaagct cttaacatgc aggtaaacat tttaccaaga 
001621 gttttgaggg aacatatttt tcatgttata ttttgcactg aacataacga atataaaggg 
001681 ggtaaaggac caattgtacg atacaattat gtttagagac tacaagtggt tgtttatttg 
001741 ttttaatata tgcttttatc tgtaatcctg agcaccatat tttgtataaa taatgcatgc 
001801 tattttgttt gctgcagatt gcaaatatcg tgtgttcaag catccaacct cttcaatgct 
001861 atgctgtaat tgtgggttga ccaactggct gttttgctga attgtattgt catctttttc 
001921 agtattagtg caatgattta tgtgcaaatt tatttgtgct acacctatga agggtttagc 
001981 tgatggcaaa atgagcgcca acgagagcct tcagatagtt cagcattaca ctgacaaggg 
002041 atttagaggt gtgatttctc atactctatt atagatgttc tccatcactt cctattgttt 
002101 tcatcctcaa gtacacattt cttgacactg cctgaataaa gtgtaatagt ataacgatga 
002161 cattccttgt gcataatata gtaatattgt ttgtctcttt cgctatattt tctactcttg 
002221 ttgccttact tattactcgc tgatttttac gctggtccac tcttactctt cacttgattt 
002281 gcatcagcaa ttgaaaaact tctggaagga tgtcgcagta aatatgctac tggagatgaa 
002341 gtccaattgg tatgtgtttt taactgaaga tttttttttt cttgatggac agtacttgtt 
002401 ttgtcttggc aatttatttc ataaacagag tgcatcattg taattaatat taggatcacc 
002461 atttacatat gttttttcgt ccatacagta ttaaactact catcacatct attcccatca 
002521 agctcctgct acacttgata cagctaatat cactgcactc tttactgaaa attatcgtct 
002581 tcgatgctta aaccactgca atatacaccg gaagctattg cctactcttt tctgtgtaca 
002641 ggcggatgtg tttctagcgc cccagattca cgcaggaata acacgtttcc aaattgatat 
002701 ggtagggaaa ttctcatatg ctgtccttca ttttaaaatc attgtcagtc ttgagaaaac 
002761 tttttggact acctgctcag aaactaacga tggcaattat ttttttaatt atcagtcaaa 
002821 atatccaatt ctggcgagat tttacaaggc ctatatggaa cttccagcat ttcaagctgc 
002881 tgtccctgaa aaccaaccag atgcaccttc atcctgataa ttgaagggtg ctgctccatc 
002941 aagatgcctg cggtaatcaa gtatatgatt tttttttagt catacatgca gattaataga 
003001 gctgctggtt tttccagtat ctatagaagc accccaattt cagaaaatct aaattaccaa 
003061 tttcgttttt ttttcttttt tcttttctag tggaagtctg catttctgca agtctccatg 
003121 aagtataccc acgacatcat gcatttcaag ctgcacatcc tcaaaaccaa ccagatgcac 
003181 ctctatccca ataatcagga ttccaagcga gccgtataca ttgatattca tgtaactttt 
003241 acttaaaaaa ttggatgagt agtctccagt gccatacatg taatttcagt gtaaaatgtt 
003301 cagtgtaaac aagatagtgg gacatgaatt acctgtgacc cacaacatta tccatccagt 
003361 actccagtac ctagggatat ggtattgttg tatatgtaat tgatgatgca ctgtctgaac 
003421 ttcagatgca gtatgtgatt agtccactga tgatgcacat acgtatgcac tgacgtaagc 
003481 agaattgaat gttggtacac atgtaaacac ctcaactatt actgaataaa ctctcatact 
003541 ggcc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AV912761 bags10c10 634
more... (Total Hit Count: 19 )
Hit Wheat ESTs
Acc. No. Clone Name Length
BJ231841 rwhdl4k02 643
more... (Total Hit Count: 27 )
/rice/oryzabase