cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK068555     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os12g0291100 ( IRGSP 1.0 )
RAP - Chromosome No. 12
RAP - Location, Length 11,270,102 -  11,271,108  ( + ) ;   1,007(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 11,270,102 -  11,270,315 ( + ) ;   214 (bp)
Exon 2 Location 11,270,427 -  11,271,108 ( + ) ;   682 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os12g0291100 Os12t0291100-01 J013156H12 204193 J013156H12 3814 AK068555 4275 AP008218.2 255669953 BAF29623.1 113649111 NC_008405.2 297613623 NM_001073136.1 115488233 NP_001066604.1 115488234 P18566 RBS2_ORYSJ


Chromosome: 12 ,  position: 11,270,102 - 11,271,108 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 aacagcactg ctactggaca tactctacta ctactagcca gtaagctagc taactaacta 
000061 cgtggctatg gcccccaccg tgatggcctc ctcggccacc tccgtggctc cattccaagg 
000121 gctcaagtcc accgccgggc tccccgtcag ccgccgctcc accaactcgg gcttcggcaa 
000181 cgtcagcaat ggcggaagga tcaagtgcat gcaggtatat atgatatata cctcctcagg 
000241 cttctccttt aaagtcaagg atcaaattaa ctcatgttac gaaattcaaa ttaacctgat 
000301 ttaaattttt acattattta ttcaggtgtg gccaattgag ggcatcaaga agttcgagac 
000361 cctatcgtac ctgccaccac tcaccgtgga ggatcttttg aagcagatcg agtacctgct 
000421 tcgatccaag tgggtgcctt gcctcgagtt cagcaaggtt ggattcgtct accgtgagaa 
000481 ccacaggtct cccgggtact acgatggcag gtattggacc atgtggaagc tgcccatgtt 
000541 cggctgcacc gatgccaccc aggtgctcaa ggagctcgag gaggccaaga aggcctaccc 
000601 cgatgccttt gtccgtatca tcggcttcga caacgtcagg caggtgcagt tgattagctt 
000661 catcgcctac aagcccccag gttgcgagga gtctggtggc aactaagcta agatcaagca 
000721 tcgcgctggt ggattgctgc ctataataat agtatgcagc tttgttttgg gctatgttga 
000781 tgatatatca atatataata tgctatatat ttttatttta cagtttggtt atgtaccatc 
000841 tcaatggcct ctgctcttaa cacatatgta ataatctctt ccctccctct ccggccggtt 
000901 ttattgtaag agtactacaa ttatcgttgg gtgaggatat gtgaaaacaa agctccggct 
000961 atatacacac aagatatgta tctagagcat atctgataaa ttcgtcg

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BJ447673 baak16m20 599
more... (Total Hit Count: 4339 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ702132 whsd7o22 725
more... (Total Hit Count: 14267 )
/rice/oryzabase