cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK068266     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os12g0292400 ( IRGSP 1.0 )
RAP - Chromosome No. 12
RAP - Location, Length 11,327,924 -  11,330,020  ( + ) ;   2,097(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 11,327,924 -  11,328,133 ( + ) ;   210 (bp)
Exon 2 Location 11,328,237 -  11,330,020 ( + ) ;   1,784 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os12g0292400 Os12t0292400-01 203875 J013149A10 3538 LOC_Os12g19470.1 AK068266 13170 AP008218.2 255669953 BAF29626.1 113649114 NC_008405.2 297613623 NM_001073139.1 115488239 NP_001066607.1 115488240
Os12g0292400 Os12t0292400-01 203875 J013149A10 3538 LOC_Os12g19470.2 AK068266 13170 AP008218.2 255669953 BAF29626.1 113649114 NC_008405.2 297613623 NM_001073139.1 115488239 NP_001066607.1 115488240


Chromosome: 12 ,  position: 11,327,924 - 11,330,020 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gtactcaagc cggaggcagc acactgcaac ttaagttttt ctatagctcc tagcaagcta 
000061 gcaatggctc cctcggtgat ggcttcgtcg gccacctccg tggctccctt ccaggggctc 
000121 aagtccactg cgggcctccc ggtgaaccgc cgctccagca gctcgagctt tggcaacgtc 
000181 agcaatggcg gaaggatcag atgcatgcag gtatcagaaa cgatacgttt caatttctcc 
000241 ttcaaagtgc tcgttgttca tatatattaa atgttggccc gattctatta tctgcatcaa 
000301 ttcattcaat caggtgtggc cgattgaggg cattaagaag ttcgagactc tgtcgtactt 
000361 gccgccattg acagtggagg accttttgaa gcagatcgag tacctgctcc gatctaagtg 
000421 ggtgccttgc ttggagttca gcaaggtcgg attcgtctac cgtgagaatc acagatcacc 
000481 cggatactat gacggtaggt actggaccat gtggaaactg cccatgtttg gatgcaccga 
000541 tgccacccaa gtgctcaagg agctcgagga ggcaaagaag gcataccctg atgccttcgt 
000601 tcgcatcatt ggctttgaca acgttaggca ggtgcagtta atcagcttca tcgcgtataa 
000661 gccaccgggt tgcgaggagt caggcggcaa ctaagcgctt tcgttccttc gtgcatgttc 
000721 tttctttttc tttttttttt gtgtgtccgt gttaagctgc acgtaattgt tctctcgcgc 
000781 tccgacctgc cgttgttgca agagtactac tacaactatc ggtctatcgt tcggtgacgg 
000841 tgagacaggg cacgtgaatg caagatctcc ggctatacac acgtactcat gtaatatgat 
000901 gcctagagca tatctgaatc cgtcgacaat gaaattttgg ttttgcaaaa tgctggtatt 
000961 tgtttatcat cctggcacgt gatatttgcc tagagcatct aaatcacttt tacgaaatgt 
001021 gcgcgtcaac aaactgatac ggcccaaatg ccagaaatta ccagcatata tagccatatc 
001081 aacttttgat tcgtatatat gaaggttgat ttagttagag aaattcggtt gtgagagaag 
001141 gaggctagca aagattcggt tgatcaagct gtaccgccag gccaggacgt gctgtgcgcg 
001201 cggctgtgcc gcttgaccgc agaaccatac ggaattgacg gaccaattgt gcatacggac 
001261 ttagctaaaa taattgttga tttttggcaa taagaaaagc gagtagcaca taaaatctaa 
001321 agtggatgag taaagggaca aaattttata catgttcagg ccttctcgat gagaagtaat 
001381 actatactcc tgttttgggg attatatttg tcagatgttg tatcaatctg acgatcgagt 
001441 tatggttatt gttggcggct gttaaatatc gattttatgc catcaatacc tgtataattt 
001501 atacagaaat aataaaacat tcaacatagt ggtaggcttt aattctaaca tattccataa 
001561 gtgttggtgt atatttggat gcaggtaata aaccaccgaa ttaggaggaa atctagacta 
001621 agttgaagga aattttcatc catacaagtg ttgggctttt taactccatt ttaacaccaa 
001681 aatgcaagcc caaaaacctg cgaaatggat aaggcagact gagaaggagg cccaggccaa 
001741 aacttgggcc agttgggcca agccaggttt cggccaaatc ctgatcatcg ctgttgatct 
001801 cagggtttgg catggacgct cttgatttac tcctgatggc agttgcaggg catttccgat 
001861 cattcgcatg ctctacaacc atcataccta cttatttaag gagctctcat cctcacttca 
001921 tatcacacac tccaatcttg agctgaatta taagaggctc tattgtattt tattgtatac 
001981 tagaattagg gaaagattaa ggtcgtagaa gaaatcggag gaattccgga gttatcggtg 
002041 atccttttct atttcttata ctttgttatt tgctttaata gaaatatcat ttcaagt

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK252245 FLbaf144p08 808
more... (Total Hit Count: 3866 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ715740 whva9h12 751
more... (Total Hit Count: 13461 )
/rice/oryzabase