Update info.cDNA ( Data source : RAP-DB )
cDNA Detail
jump to Other species ESTs data to homologous Rice cDNA
| General information | |
|---|---|
| RAP - Accession No. | AK065733 Link to RAP-DB ( IRGSP 1.0 ) |
| RAP ID | Os12g0641500 ( IRGSP 1.0 ) |
| RAP - Chromosome No. | 12 |
| RAP - Location, Length | 27,673,292 - 27,677,992 ( - ); 4,701(bp) |
| Exon (Data source : RAP-DB) | ||
|---|---|---|
| Exon 1 | Location | 27,673,292 - 27,673,940 ( - ); 649 (bp) |
| Exon 2 | Location | 27,674,065 - 27,674,331 ( - ); 267 (bp) |
| Exon 3 | Location | 27,675,637 - 27,675,875 ( - ); 239 (bp) |
| Exon 4 | Location | 27,676,786 - 27,677,019 ( - ); 234 (bp) |
| Exon 5 | Location | 27,677,116 - 27,677,352 ( - ); 237 (bp) |
| Exon 6 | Location | 27,677,449 - 27,677,992 ( - ); 544 (bp) |
| Related Rice IDs | ||||||||
|---|---|---|---|---|---|---|---|---|
| RAP Locus | RAP ID | RAP Annotated Accession No |
KOME Clone ID |
KOME Clone Name |
KOME Cluster ID |
MSU ID | cDNA Accession No |
RiceXPro FeatureNum |
| Os12g0641500 | Os12t0641500-03 | J013038C11 | 201112 | J013038C11 | 1057 | LOC_Os12g44390.1 | AK065733 | 13773 |
Chromosome: 12 , position: 27,673,292 - 27,677,992 bp |
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| Sequence (Data source : RAP-DB) | |
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Nucleotide
Fasta Format |
000001 atcgttttgc tccgctccgt cattcgaatc tcgttttggc cggaaaccct agttcgcttg 000061 gagttggccg gaaaccctag aagcgatggc cgcggcggcg gcaggcaaag gcggcggcgg 000121 gcaggggcgc atccatcggc tggaggtgga gaacttcaag tcgtataagg ggacgcagac 000181 aatcgggccc ttcttcgact tcacggccat catcggtccc aatggcgccg gcaagtccaa 000241 cctcatggat gccataagct ttgtgctcgg cgttcgatcc gcccacctcc gaggcgccca 000301 gctcaaggac ctcatctacg ccctcgacga ccgcgataag gaggccaagg gccgcagagc 000361 ctccgtccgc ctcgtctacc acctccccgc caccggggac gagctccact tcacccgcgc 000421 aatcaccggc gccggtggca gcgagtaccg gatcgacggc cgtctcgtca cctgggacga 000481 ctacaacgcc aaactcagat ccctgggcat cctcgtcaag gctcgcaatt tcctcgtctt 000541 ccaggtcaga tgtccctaat ttaacatttt cctcatacaa ctcctccctg attaattata 000601 tagcactaaa taaatttatg aattaccatt tgcaccgcag ggtgatgtgg aatccattgc 000661 ctccaagaat cccaaggagc tcaccgcact tctggagcag atctctggct ctgacgagct 000721 caggagagaa tatgacgagc tggaggacca aaaaaacagg gccgaagaga agtctgcgct 000781 tatttatcaa gagaaaagga ccatcgtcat ggaaaggaag cagaaaaagg ctcaaaagga 000841 agaggcagag aatcatctac gcctccagca ggacttggta ccaacatgat tatagtaatc 000901 ctcactcaca gttttaccat tgtttattct atacattgtt cacattgagt tgtgtttcct 000961 cacttgtgtc cagaaactag ccaagacaga acatctccta tggcaactct acaccattga 001021 aaaagatgca gagaaaatag aagctgaact tgaggaggat aggcggtctc ttcagcaagt 001081 gctggaagag aaccagtcct ctgactatga gctttctgca aaaaagaagg agcaaagtgg 001141 gtttctcaag aaaatgacat tatgcgagaa gagtatagcc aagaaaaagc ttgaacttga 001201 caagaaagta aagtaccttc ctgtctattt ttcgcttcac caaactttac ttgtggcagt 001261 tcagtcttgg gcttatccga agaaaatggc tagtattgtt tcattactca atacaaactt 001321 atggcatgat aataggactt cttttcatgt agtatcaagg ttttatgtgg ccatcacgtc 001381 actagcaatt ttactcaata caaacttatg gcatgataat aggacttctt ttcatgtagt 001441 atcaaggttt tatgtggcca tcacgtcact agcaattttc tcccacttca tattgcccgg 001501 tacccctcta gaatctctac atgtgcacat tactttgtaa aacttacaac tgctgctccc 001561 acagtgctct gggtgttttc tggctgctgt gttcacttct gcagctatcc atgtcgatcg 001621 gttagctgtt agtgtgattt gggaacacag ctctctgctc tactccacgc ctctctgatg 001681 tgggccgttg tttagtcatt gctacacaca cttctgcaca tgttggctgt tttgctctcc 001741 gtcctattca tgcattccct gcgcccatga caagtgggag taccacctgc ttgccagttt 001801 ccctggttga gctaggcact gtgcccagta acttttttct tgtgctatga atattgactg 001861 ctttacatgt ctaaaaatga acattgtatt tgtatatccc acccattcat ttgcttttac 001921 cctagcctca ttacttccac tgttgtcaat gaattggatg cttatatggc accttgtttg 001981 tttatggaat cgttcaatgt tgcccttttg ttattccagt caaaacaatt tccttcttgc 002041 agtttagaat ctctacttca tgaactgggc acattaaatg tattctaatt attactgcat 002101 cttttttccc tcttcagcaa cctgagcttc ttagattgaa agagcaaatt tctcggctga 002161 aatccaaaat caaaagctgc aacaaagaga tcgacaaaaa gaaggatgat agcaagaaac 002221 atttggaaga gatgaaaagt ttgcagagtg ctttggttga tgtcacaaga gctattgatg 002281 agttgaatga gcaaggccaa aataaaagcg acaaactgca attagctgat gaccaactcc 002341 aggaatatca tagaatgtga gttcagaaga catcttacat attatgttaa gtttaaagtt 002401 caattatctt tcattaagtt cagttatcta atggaagtgg gacataatca ccatcatcca 002461 tcatccatgt acttctctac aaaaacgaat taatggttgt gtgataagat tgctactgct 002521 taactgcatg tatcaattat aaaaaaaact gtgttttaaa tacctagaca gccttctttt 002581 ttttgaatga tgtggctaca ctagtgctgg aaaaaagcct tgcttcttta tagtcaggac 002641 aatccaatat tttacaacca caggtggata cataatacca gaccttattg gttacggtta 002701 agaacgaacc tttcatttta ctatactagc atactgctca actgcatgat caattatcaa 002761 aaaaaaatcc tgtgttttaa agacctagac agccttctct tttctttaat gatgtggctg 002821 cgctagagct ggaaaaaagt catgctaagt atagtcagga caatccaata ttttacaacc 002881 acgggtggat acatgatacc agaccttatt tattggctac ggttaagaac gaacctttca 002941 ttttactata ctagcatatt gcccgtgcat tgcaacggga ttttaattaa agaaaattat 003001 cattaagccg ttattaccat cattttacat acataatctc ttaatctctg tatatatttg 003061 ttattgacat gtaggccctt tggcctcgca ctgtattttt tccttcccac aaaaagtagg 003121 aagttggtgg tgggggtggt tgacatgtgg accctttggc ccacatgtca tttttacttt 003181 ccaaaaaggt agggagttgg tggtgggaat ggtggcagat tcaccactca ccaccactac 003241 tcccttttca aggagtatat acataatctc ttaatctctg tatatatttg ttactgacat 003301 gtaggtcctt tggccccgca ctatcctttt ttctttccca caaaatgtag gaagttggtg 003361 ctgggggtgg ttgacatgtg gaccctctgg cccaatatgt catttttact ttccaagaag 003421 gtagggagtt ggtagtaggt gtggtggcag attcaccacc accactactc ccttttcaag 003481 gagtattgat actcagccaa aaataatgtt ccttttctaa tgactcttga tttagttgtg 003541 gacagttatg acataaatcg gtaaatattt ttttgttcct tagcttgttt tattttttct 003601 atgcctattg atgtatccct gtgaagattc agtacacttt agcattaact ttctgttaca 003661 gtaaggaaga tgcgggaatg agtactgcaa aactgagaga cgagaaggaa gtttttgata 003721 aagagcttaa tgctggcgtt gaagcaaaaa agaatttaga ggagaatatg cagcagctgc 003781 gtagccgtga gaatgagatt ttgtcacaag agcgtgaatt gcgtgcaaag cttaataaaa 003841 ttcttcattc aatccccaag catgaagatg agcttgctca cttacgtgag gaacataaca 003901 aaattgcaaa ggagcgccag acctcagggt tagtccgtac caagtccttt gatcttgata 003961 gggtgtctca catccttaag cacactaatt tgcactcaat tatcaacggt atgttttact 004021 tctattttat acttattaca aatattgtgc agagttaaat accaaatgtt gaagcagagg 004081 ttggatgaga tagatacaaa attacgagag ctcaaagctg acaagcatga aagtgagcgg 004141 gatgctcgat tttcagaaac agttaggagt ttaaagcggc tattccctgg agtccatggt 004201 cgcatgacag aactttgtag gccttcacag aagaaataca accttgctgt cactgttgct 004261 atggggaagt tcatggatgc agtagtggta gaagatgaga acacaggaaa agaatgcatt 004321 aaagtacctc ttttgtgact tttactcagc tgattcttca acatttttct tatatcggga 004381 gagctcatta tattatctgc agtagtcaat tgtaatactt attttttttt tcaaagcgta 004441 cctttggaaa ttaaaatacg tagaacctct tttaatgaaa taaaatgaat agcttcacgt 004501 gaactgtaaa ctgttgaaag aagtttgaac tgattccatt caaatggatg tgacggtcac 004561 atggagggag agtttgtgag tagggcattt gatagatcaa tatcatattt ggggattctg 004621 ttgactcaca tccattcaaa ttagtcccat gtaaatttca tcaaataact tatttgagta 004681 atattaagat aacctgacta t |
Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.
| Hit Wheat ESTs | |||
|---|---|---|---|
| Acc. No. | Clone Name | Length | |
| CJ951864 | whchul33d24 | 693 | view details |
