cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK106172     Link to RAP-DB ( IRGSP 1.0 / Build5 )
RAP ID Os01g0771200 ( IRGSP 1.0 / Build5 )
RAP - Chromosome No. 1
RAP - Location, Length 34,272,985 -  34,274,872  ( + ) ;   1,888(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 34,272,985 -  34,273,329 ( + ) ;   345 (bp)
Exon 2 Location 34,274,255 -  34,274,872 ( + ) ;   618 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No
KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
Tigr ID cDNA
Accession No
RiceXPro
FeatureNum
Genomic Nucleotide
Accession No
Genomic
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
Os01g0771200 Os01t0771200-01 001208C02 109022 001208C02 16112 LOC_Os01g56470.1 AK106172 8012 AP008207.2 255672756 BAF06297.1 113533914 NC_008394.4 297598437 NM_001050918.1 115440206 NP_001044383.1 115440207


Chromosome: 1 ,  position: 34,272,985 - 34,274,872 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 agaaacgagc cggccggatt gctctccaag ccaaacacgg cccagagagg cgagagcccc 
000061 cacaccgcca aacccgaccc ggaaatcaac tgcacacgct ccgatcccct ctctccagat 
000121 cgattcggac cccatgggtt ggcgttggca cgacgacggc gatgacggcg gccgcggcct 
000181 gggcgacatc cccgacctcg ccggcggcgg cggaggcgga gatggggagc gctgcgccac 
000241 gcgccgggtg gtgcagtctc ggtgccacac ggaggaggtg gagcccggcc gcttcgtccg 
000301 caagtgcgag aagaccgagc agctcctccg cgactgcgtc ggcaggtata tacatatact 
000361 ccatggcctc gcgcttttcc ctgatctgtt ccttcttttc ctgcgaggat cccctctttg 
000421 catattactg ttcgttgttt tagtgatgaa ttggtgataa catgtcatgc gcagttgtgt 
000481 tactattagt cccgtgtatg attgtgagct gtgtatagcc gcctctctgt ggacgatttt 
000541 cgtgagtctg tcctcgctga tttgatacaa acacgaattc attaagaatg gggaatgtgc 
000601 cgtgatgatc gagacgtttg agttctgtgg tgaatagtat gatcaaatgt gtgtaataac 
000661 ttgggctttt gaattttggt agctaattag atatggaatt tctatccagt tttaggtgcc 
000721 cgtgccatcg acatgggtta aaagttattg tgggctattt tgcgctcaac ttgttaatca 
000781 acaaattttg gacggaggca gtactttgta ggcatggggt aaatttgtat gatacacttg 
000841 ttgcttgaag atgttcgtga actcatggga tttctagaca cctacaacca attacattac 
000901 agtgttatta tattctaacg atatgtaaag agcagctgtg ttcgtgttgt ctacactaaa 
000961 gattcaacaa ctagtggtca tcatcaaacc gatagcatat cctcattttg caggattttg 
001021 aaaactcaca tctcgttagc atccttcctt ttatttcttc acatgcctca tgttaaactt 
001081 ttaagtgcat gaaacccaaa tttctgtatt tcgtagctcc ttgtaaccaa tgtacaacac 
001141 tatgattagt attctggata gattttgtac ttcccaaagt attttggttg ttgacaagct 
001201 attacaataa tctgatggat aacctaccat acattatttc tcctaaccga tcacaataat 
001261 cttcttctag gccctctgaa ctggtggaat caaaaactga aaatactgaa gaagacgtca 
001321 cagatgaaat gaaaagcggg tcactatctc ttggttttcc gaccaatgag ccctttgcat 
001381 ttcctggact tcgcagtgac atagaagctc ttgagaaagg ccttttcggg agcattggta 
001441 gctttctgga tgatgctgag aggatgacca atgatttctt gaagtctttt ggtgtccctt 
001501 ccatcaatga aagggagtcg agctcatttg atggacaacc tacaggcagg cacattggtg 
001561 gacaacctgc aggcaggcac attgaggaag gtactgcaaa ggacactaaa cagaacgact 
001621 acgcagaatt cagcagcaag attacagatg tgtaaggatc tacagttagc tgacgcacct 
001681 ttgggagcag cttgccaatt ttgtattttg aacatctcca tggttgtaat tggaagggga 
001741 aggatcagtt tgactgtttt ataagcagag tcgtctgaag tctgaagtgt tgcgcttata 
001801 agaacaattg tgtatattac tgttttagat aagcctgttt gtgttcctca acaatgagat 
001861 caattatgga tggttttttt ctctgctt

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs  
Acc. No. Clone Name Length
BY853438 bast72d03 421 view details
/rice/oryzabase