cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK060925     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os12g0167900 ( IRGSP 1.0 )
RAP - Chromosome No. 12
RAP - Location, Length 3,428,230 -  3,430,773  ( + ) ;   2,544(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 3,428,230 -  3,428,277 ( + ) ;   48 (bp)
Exon 2 Location 3,428,494 -  3,428,593 ( + ) ;   100 (bp)
Exon 3 Location 3,429,199 -  3,429,309 ( + ) ;   111 (bp)
Exon 4 Location 3,429,391 -  3,429,695 ( + ) ;   305 (bp)
Exon 5 Location 3,429,778 -  3,430,187 ( + ) ;   410 (bp)
Exon 6 Location 3,430,280 -  3,430,773 ( + ) ;   494 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os12g0167900 Os12t0167900-01 001035H11 103279 001035H11 8966 LOC_Os12g07010.1 AK060925 43400 AP008218.2 255669953 BAF29269.1 113648757 NC_008405.2 297613623 NM_001072782.1 115487525 NP_001066250.1 115487526 P35684 RL3_ORYSJ


Chromosome: 12 ,  position: 3,428,230 - 3,430,773 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 tctgcactca gctcgcgccg ccgccgccgt cgccgtcact ctcctcaggt aagctcctcc 
000061 cctcctcatc ctccaatccc cgcttcgatt cagattttgc ctccgctccg tgtccgcaat 
000121 ccgccattag ttgttagtga gctagctggg agatcgaatt ctcgtcgctg gtgctgtagt 
000181 ttgatcgctg tggcttgcga ttggtgattt tacgggcatt ttcttggttg cggatctcat 
000241 ggcttgtgtg ggtttcgttt gcaggtaagg aggaggaaga tgtcgcacag gaagttcgag 
000301 cacccgaggc atggatccct cggcttcctc ccgaggaagc gctcctcccg ccaccgcggc 
000361 aagggtacgt gaatcctttg ccttccacac gcttgattgg tgatgcatga attgcgagtt 
000421 tcactgtccg tattgatctg aagacggatt tcgtttatgc ccagcgagtt gattgcgagt 
000481 ttcactgtcc gtattgatct gacgagggat ttcgttatgc tctgcgaatc ataatctagt 
000541 gcggcatgat gtagtaatcc atattgtgca gctaatagat tcagctatct aagtgtgtac 
000601 gcgtgatatg gttcgtatgt tttctgttag gtagatacag gtgtttctta ttagagtatt 
000661 ttcgcaatca tttggatgtt cgtttggcta tgtgttccta aatatagcgc tttattttct 
000721 aatccttttg gtatatatgc tgctaacata cctagattga cacatgctca tagatttttt 
000781 gttttattga tgtggtacat aaatagttaa gaatgcacct gtctttaaaa tgtctgtaca 
000841 tggatgtaac ccaacttaaa atttcaggac ataggcataa cccaatggga tatatattgc 
000901 ttctgtggaa cttggagaat ttagttacta ttcagttgta cgctgacact agatcctatg 
000961 tttttgcagt gaagtccttc cccaaggatg acgtatcaaa gccctgccac cttacttcct 
001021 tcgttggcta caaggctgga atgacacaca ttgtgcgtga ggtcgagaag cctggctcca 
001081 gtaagttgct ctgcatcttg cattcgtgtt cattggaggt atgccttgaa catattaaca 
001141 ccatatgttg acaatgtgca gagctccaca agaaggaaac ctgcgaggct gttaccatca 
001201 tcgagacccc tccgcttgtc attgttggac tcgtggccta tgtcaagaca cctcgtggac 
001261 ttcgctctct caactctgtc tgggcccagc accttagcga ggaggtgcgg agaaggttct 
001321 acaagaactg gtgcaaaagc aagaagaagg ctttcactaa gtatgccctt aagtatgaca 
001381 gtgatgctgg caagaaagaa atccagatgc aacttgagaa gatgaagaag tacgcatcta 
001441 ttgttcgtgt tattgcccac actcaggtga gattgccatt gcctcttgta ctcttctgaa 
001501 ttctgaagag ttatcatgtt ttgctgacca tttcttgtca aaattcagat cagaaagatg 
001561 aagggcttga agcagaagaa ggctcacctc atggagatcc agatcaacgg tggcactatc 
001621 gccgacaagg tggactatgg ctacaagttc tttgagaagg aaatccctgt tgatgcagtc 
001681 ttccagaagg acgagatgat tgacatcatt ggtgtcacta agggtaaggg ttatgaaggt 
001741 gtcgtcactc gttggggtgt cacccgcctt cctcgcaaga cccacagggg tctccgcaag 
001801 gttgcttgta ttggtgcctg gcatccagcc agggtgtcct acactgttgc ccgtgctggt 
001861 cagaacggat accaccaccg cactgagatg aacaagaagg tttacaagat tggcaagtct 
001921 ggtcaggagt ctcatgcggc ctgcaccgag ttcgacaggt atacatcttt agaacgtttg 
001981 aaggccttga gtaatgttat gtgcattcca ttctaaggtt gtgatgacat ctgacctttc 
002041 tcccttgcag gactgagaag gacatcaccc cgatgggcgg cttcccgcac tacggtgtgg 
002101 tgaagggcga ctacctcatg atcaagggtt gctgcgtcgg tccgaagaag agagtcgtca 
002161 ccctccgcca gtcgctgctg aagcagacct cgcggctcgc cctggaggag atcaagctca 
002221 agttcatcga cacctcgtcc aagttcgggc acggtcgctt ccagaccacc gacgagaagc 
002281 agaggttctt cggcaagctc aaggcctagg ccatcagaat tcaatcgaac ctcacctgat 
002341 agctttccca gtttctgtac ttgtcctgag ttttgtggca gatattttga gtacccagtt 
002401 taaatgcttt gctactctga gctgctggtg ctgcggatga tcaaactgtt gagatttatg 
002461 aattttgaac tcgatagtta tgttttttcg cctgccttgc atctttcagc taccaattgg 
002521 ttgaatcaaa tttgaaattt gttt

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK250292 FLbaf78g24 1405
more... (Total Hit Count: 98 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ683303 whpc11o07 854
more... (Total Hit Count: 822 )
/rice/oryzabase