cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK240911     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os11g0143200 ( IRGSP 1.0 )
RAP - Chromosome No. 11
RAP - Location, Length 1,988,901 -  1,991,987  ( - );   3,087(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 1,988,901 -  1,989,197 ( - );   297 (bp)
Exon 2 Location 1,989,339 -  1,989,475 ( - );   137 (bp)
Exon 3 Location 1,989,590 -  1,989,696 ( - );   107 (bp)
Exon 4 Location 1,989,815 -  1,989,893 ( - );   79 (bp)
Exon 5 Location 1,990,059 -  1,990,145 ( - );   87 (bp)
Exon 6 Location 1,990,795 -  1,991,073 ( - );   279 (bp)
Exon 7 Location 1,991,216 -  1,991,987 ( - );   772 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 MSU ID cDNA
Accession No
Os11g0143200 Os11t0143200-01 J065037E05 300272 J065037E05 LOC_Os11g04710.1 AK240911


Chromosome: 11 ,  position: 1,988,901 - 1,991,987 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gtcggagcct catcaatctc actcgctcct tgcccacgcc gcgcacgccc acgccgccat 
000061 ggccgcggcc gcgctgctcc tcctcgccgc ggccgccgcc atcgtcgtgg ttgccatggt 
000121 gctcagatgg ctcctcctcc tcgggggccc cgccgccggg aggctgggga agagggcgct 
000181 gatgccgccg gggagcacgg gcctgccgct gattggcgag acgctgcggc tcatctcggc 
000241 gtacaagacg cccaacccgg agccgttcat cgacgagcgc gtggcgcgcc acggcggcgt 
000301 gttcaccacc cacgtcttcg gcgagcgcac cgtgttctcc gccgacccgg ccttcaaccg 
000361 cctcctcctc gccgccgagg gccgcgccgt ccactccagc tacccgtcct ccatcgccac 
000421 gctcctcggc gcgcgctccc tgctcctcac ccgcggcgcc gcgcacaagc ggctccactc 
000481 cctcaccctc acccgcctcg gccgccccgc gtcgccgccc ctcctcgcgc acatcgaccg 
000541 cctcgtgctc gccaccatgc gccagtggga gcccgccgcc accgtgcgcc tcatggacga 
000601 ggccaagaaa atcaccttca acctcaccgt caagcagctc gtcagcatcg agccgggacc 
000661 gtggaccgag agcctccgcc gcgagtacgt caagctcatc gacggcttct tctccatccc 
000721 ctttcctctc gccaacctcc tcccttttac cacctacggc caggccctca aggtgctcgt 
000781 tcttttgcct ccattcattt tttttaatct ttccctatgc atcttacatt gccttacaac 
000841 gaattggcgt cagctattga tgtactctta tatctctcat aaaaatgtgg cattgcatga 
000901 tttgattcct gcaggcgagg aagaaggtgg ccggtgcact gcgggaggtg ataaagaaga 
000961 ggatggagga gaaagcggag aatggtggct ccattgggga tgatgagggg aagaaggaga 
001021 agaaggacat ggttgaggag cttcttgagg cggagggtgg cagcttctcg gaggaagaga 
001081 tggtggattt ctgcctttct ctgctggtgg ctgggtatga gactacgtcc atgctcatga 
001141 cgctcgcggt caagttcctc actgagacgc ctgctgcgct agctgagctc aaggtataaa 
001201 actatttaaa ttagttgttt ggtagtaatt gtcaattctt gtatacacgt gcggtagtag 
001261 gtaccaggtg ctgtcaattg tcaaataacg cctgaaatag ggaggaattt catttattat 
001321 agttgagtgt taattgttaa aaatatggtt gttagactat ctttcacacc aattctgtcc 
001381 aaaagagaag tttctacttt ctatttccgg tctgttgttt ttagtcaagt tcactacagc 
001441 tttgttcctg gtttgttatt gacttgaata cttgatcctg agtattaatt tattattgac 
001501 tcgaaccatt tatgttcttg agtcctgact tcttttagtt taactgtgta agaatgaatc 
001561 ttcagttcag tcagtactct ggtttcctca ttttattttt ttctcatttt atttacttgc 
001621 attgatgagt gctaggttcc tcagtctaac aacaaagcga gagaatcgta gcaataatat 
001681 cacaataggt ccaaatctta gaaatctgaa cttcatgact tttcctggta caagttttgt 
001741 ttccaatatg ttaagctttg agagtcctca agattggtcc aagtggtatt ttttacttca 
001801 ctacatgtgt aactgattcc agatatcctg ctgattttac aggaagagca tgccaatatc 
001861 agggatatga aagggaaaaa acaaccacta gagtggagcg attacaagtc catgccattt 
001921 actcaatgtg taagttggaa agcccttgtt ttcttaaaaa ttagctactc ctaaaaatat 
001981 catgccaaca gcacgaatcc atctagtgta aatggcatct cttaactgaa cctttgaaac 
002041 ggtacagttg gtttactcac atcatgatta aatgaagggt taacatttct gcaggtgata 
002101 aatgagacac tccgtgtggg taacattatt agtggagtat tcaggcgagc aaacactgat 
002161 attcattata aaggtatttc aatataaact atactaagtc cacgtacatt ttattcatta 
002221 tctaaaagaa atccccatac atttttcatc agaaatgctc attatgtatg gcatttttct 
002281 ttgtttctta gattacacaa ttccaaaggg atgcaagatt tttgcttcat tccgagctgt 
002341 gcaccttaat aatgaacact acgagaatgc tcggacattt aacccttgga gatggcaggt 
002401 actcctaggg gctctgtgtt attgctattg ggtctactta ttcaattatg tcctgtgcta 
002461 caaaagtaaa attcacgctg aagctatctg caacaaattt gttcctgtgc agatcaacaa 
002521 taaacttcag aatgcggtag gggccaatat atttactcca tttggcggtg gaccccggtt 
002581 gtgtcctggc tatgagcttg cccgggttgt cgtttctatc ttcctccatc atcttgtaac 
002641 gcgctttagg taagccacct taatctctca aattcaatcg ctatcttgct agccagaaag 
002701 gtgtagataa tctgcaaatg gattttccac attgtgatcc aaattgggca ccagtctgat 
002761 tccataacaa cttgaccaat gaatttgcag ctgggaagaa accgaagaag atagacttgt 
002821 cttcttcccc accacacgaa ctctcaaagg ataccctatc aatcttcggc tgctttcaga 
002881 atcaatttgc tgacgttagg tcgttttgca gctgctctta tcttggaaga aagactaaac 
002941 atagaaaaaa ttatagaaaa atagttctcg cataggtagt gcatttccct cttttttgtt 
003001 gatctgtaac ttggtatgta aacagtaggc agcagagttg tgctgcttgt aaaatgacct 
003061 aaaatgctgt ggataccggt tacaagc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs  
Acc. No. Clone Name Length
BY840167 baet39b10 453 view details
Hit Wheat ESTs
Acc. No. Clone Name Length
BJ269817 whoh4l14 587
more... (Total Hit Count: 11 )
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