cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK121773     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os11g0113700 ( IRGSP 1.0 )
RAP - Chromosome No. 11
RAP - Location, Length 629,588 -  632,625  ( - );   3,038(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 629,588 -  631,497 ( - );   1,910 (bp)
Exon 2 Location 632,493 -  632,625 ( - );   133 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os11g0113700 Os11t0113700-01 J033092J11 216492 J033092J11 21275 LOC_Os11g02240.1 AK121773 26886 AP008217.2 255679674 BAF27419.1 113644278 NC_008404.2 297612483 NM_001072106.1 115483824 NP_001065574.1 115483825 Q2RBF0 CIPKF_ORYSJ


Chromosome: 11 ,  position: 629,588 - 632,625 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gcatccactc ctgatactac cactcaaaaa ctctctctct ctacccaaac aggtgttgag 
000061 aaagaagtga gggacagatc caaaaagttc accttttgtt acctgaatct cctcttcttc 
000121 ctgtcaccgg aaggtatgca gttcctctct ccatatcatc ttctagcgtt tctttctact 
000181 gattcttgat tgctcgcttt tttccattat tctcttttgc tccaaggtag gggtaggggc 
000241 acatcagttg gacaagtaga aattgatggc acatcaattg agtagatgcg gaaatttatg 
000301 gtttttagtt aaagtttaga ccaagccgat gacaaagtgc tgccgtttaa tcgaatacga 
000361 cgatatgtac tcttgcaatg gcatgtgtca tgaggtgttt gggtttggcg aggctcagtt 
000421 ttcattaatt tcccctcctt cccatggccg tatcaaacct aatctttgaa aaatattcaa 
000481 ttcatgtggg tgcggaatca ctagatgcag cttaactcca tgcaaatcct aactcctgcc 
000541 atgtgcccat gtgcctgtcc cttatcctga tttgcatctg aattcatttg ctgagtaatt 
000601 tgcttgttca gtgcctaatc tgctagacgt ccaaacaaag ttttaattat gagcaaaaga 
000661 tctagtaatg tcattttttc taaattcgta atgttttggt ctctgaattc gtaattgact 
000721 agttttatta atcacctttc tgaacttgaa cgaaagatgt agaataattc acatcggttg 
000781 caaattttaa ttcgtaattg actagtttta ttttgttagc ttctgattta ctgtcctaga 
000841 tttctgataa gtacttagtt gaagttcctt attatattaa ttatctatta cataacacgt 
000901 tgaactcatg taagttctga ttgattctag ggaacactta tattatataa gtagtaggta 
000961 caaaaatgca tttagtatta caataagcct tcaaaattct tcgcattaac ttttgtttgg 
001021 ttaaagttct tacagacttt cagattatta tacgtacctt gttagcactt gagtgcatat 
001081 cctaggacat tcaattacta aatctgatgc ctggttttgt ttatacaggg gaatcaataa 
001141 aaaaaacaag cagtgaaagc ctcaaggaat gctgaaagat gtgcttgcat agaagaaatt 
001201 ttccgtgtga gataaaacag attgctggtt caccagtgct actgatctac tcaagtcttg 
001261 atgtgagtga tcaactttcc tgcactaatt ctacaccatt tagactccga aacgacgatg 
001321 atataagaat gttgttctcc atccacgatc atgaccttgg ggaggatggc taaagaattg 
001381 cagtccatct gattggtggt caaaacatag tgctgagatt tatatctttg tgggcatgga 
001441 gagtagaggg aagattctaa tggagaggta tgagttgggg agattgttgg ggaaaggaac 
001501 atttggcaag gtgcactatg caaggaatct ggagtcaaac cagagtgtgg ccataaagat 
001561 gatggacaaa cagcagatat tgaaggtcgg gctttcggag cagatcagac gtgagatcac 
001621 aaccatgcgg ttggtggctc ataagaacat tgttcagctt catgaggtca tggcaacacg 
001681 gaacaagatc tactttgtga tggagtatgt gaaaggtggt gagctatttg aaaaggttgc 
001741 aaagcgtgga aagcttacag aggttgttgc acataagtat ttccagcaac tcattagtgc 
001801 agtggattac tgccacagtc gaggtgtgta tcaccgggac ttgaagcctg agaacctact 
001861 gttggatgag aatgagaacc tgaaagtctc agactttgga ttgagtgcgc tttcagagtc 
001921 gaagaggcaa gatggcttac tccataccac ctgtggaaca cctgcatatg tagctccaga 
001981 ggtgattagc aagataggct atgatggtgc aaagtcagat atttggtctt gtggtgttat 
002041 cctgtttgtt cttgttgctg gttaccttcc tttccagggc ccaaacttga tggaaatgta 
002101 tcggaagata caacacggtg aattcaggtg ccccggttgg ttttcacgca aactccagaa 
002161 gttgttgtac aagatcatgg accccaaccc aagcacaagg atttcaatcc agaagataaa 
002221 ggagtctacc tggttccgga aaggtcctga ggagaaccgt attttgaagg aaagaacttt 
002281 gaatgaaaac accaccaaaa atgttgctcc ggtgcttggt gtgagacgca agaaaaatgc 
002341 tcatgaagat gtgaagccca tgtcagtgac aaacttaaat gcttttgaaa ttatctcttt 
002401 ctccaaggga tttgatctct ctggcatgtt cattgtaaag gaatggagaa atgaggcaag 
002461 gttcacttca gataaatctg cctcaaccat aatctcaaag ctagaagatg tagcaaaggc 
002521 gctaaatctc agggtaagga agaaagacaa tggtgtagtg aagatgcaag ggaggaagga 
002581 gggaaggaat ggtgttcttc agtttgacat agagatattt gaggttacca cttcctatca 
002641 tatcatcgag atgaaacaaa caagtggcga ttcattggag taccgacagc tactggagga 
002701 gggcatccgg ccagctctga aggacattgt cttggcctag catggagatg aatagcagca 
002761 gtcgcaagag tagattttga tgtctcaagc atttagtttc cgctcctcaa attcattagg 
002821 ttttagctca aatgaattta tttgtcttgc ctgtgttctt tttagcatct atgtttttgt 
002881 atctggagag ttcatgttga gacaatgtat gcaattgtat ttggagagtt gatgtttagg 
002941 caatttatgc acaatttaga tggagtctgt cgagagtaat tttatgagaa attgagctgc 
003001 aatataaaaa ttggctttga gcctttcaag ctttcttc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BJ463001 bags25f07 605
more... (Total Hit Count: 20 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ707525 whv3n10p16 775
more... (Total Hit Count: 90 )
/rice/oryzabase