cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK110811     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os11g0184800 ( IRGSP 1.0 )
RAP - Chromosome No. 11
RAP - Location, Length 4,277,032 -  4,279,325  ( + ) ;   2,294(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 4,277,032 -  4,277,238 ( + ) ;   207 (bp)
Exon 2 Location 4,277,328 -  4,277,445 ( + ) ;   118 (bp)
Exon 3 Location 4,277,632 -  4,277,858 ( + ) ;   227 (bp)
Exon 4 Location 4,277,977 -  4,278,201 ( + ) ;   225 (bp)
Exon 5 Location 4,278,374 -  4,278,524 ( + ) ;   151 (bp)
Exon 6 Location 4,278,611 -  4,278,817 ( + ) ;   207 (bp)
Exon 7 Location 4,278,914 -  4,278,992 ( + ) ;   79 (bp)
Exon 8 Location 4,279,077 -  4,279,325 ( + ) ;   249 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os11g0184800 Os11t0184800-01 002171F05 113665 002171F05 19879 LOC_Os11g08200.1 AK110811 18075 AP008217.2 255679674 BAF27763.1 113644622 NC_008404.2 297612483 NM_001072450.1 115484512 NP_001065918.1 115484513 Q0IU52 ASP1_ORYSJ


Chromosome: 11 ,  position: 4,277,032 - 4,279,325 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 actcaaacca tcccaatgaa cagagtttca aaagagaaag aagtatagcc cttcaggctg 
000061 tcacagcact tgtgtctaag agctccacct ccatcacacc atgactgcaa ggttggcact 
000121 gctcgccagc cttcttctcc tgctccaact ggtgccgcca tcctctgccg tggtgttgga 
000181 gctccacggt aacgtctacc ctattgggta agcaaacctt ctttccagag aacccatcaa 
000241 cgttttgtgt gtccaatgtt cagtgcaatg tttgacattt ttgttgttct ctgcagccat 
000301 ttcttcatca ccatgaacat cggcgacccg gcaaaatcct acttcctgga catcgacacc 
000361 ggcagcaccc tcacctggct gcagtgcgac gccccctgca cgaattgcaa cattgtacac 
000421 tcacgtgcca tatttttaga tcaagcatag aaaacctctt tgaattcatg tccttgattc 
000481 gcttctactc acattcagaa tagggccaaa atgagcaatc ttcaatgcaa ccatgtcgtt 
000541 ttggtttcag tgcatctatt gatgagttct ttttttgtca accttttcta atcaacacag 
000601 gtaccacacg tgctgtacaa gccaacccca aagaagctgg tgacctgtgc cgactcactc 
000661 tgcactgacc tgtacactga tctgggcaag cccaagagat gtggatccca gaagcaatgt 
000721 gactatgtga ttcagtacgt cgacagttca tccatgggcg tgctcgtcat cgacaggttc 
000781 tccctctcag caagcaacgg caccaatcct actaccatag ccttcgggta agccaccaca 
000841 agtcgaaaca ttatgcattt gcatgatatg tcagtatagt gacacacacc ggcgatgacg 
000901 gtgatgactg actaccctct cttgcttgct tgcttgctca tgtagctgtg ggtacgacca 
000961 ggggaagaag aatcgcaatg tgcccatacc ggtagacagc atcctcgggc tcagtagagg 
001021 caaggttacg ctgctctcgc agctcaagtc ccagggggtg atcaccaaac atgtcttggg 
001081 ccattgcatc agctcaaaag gtgggggttt cctcttcttt ggggatgccc aggtgccaac 
001141 ttcaggtgta acctggaccc ccatgaacag gtaggcactg ttgcccgtca agagcttgtc 
001201 ggtgaaaact atttgacaaa gttggcttca cgtaacgata acccgcaaag ttagagatgg 
001261 atatgattga gcttttagta tccttttgta agtcaatttg acatggtatt acatatttac 
001321 atggcattgt gttttgttcc agagaacata agtactactc tcctgggcat ggaaccttgc 
001381 acttcgattc aaatagcaag gcgataagcg cggcaccaat ggcagtgata tttgacagtg 
001441 gtgccacata cacctacttt gctgcgcagc cataccaagc gactctctca gtggtatgca 
001501 cacttgcctt ttatattcgt atgccaatat atctgagcag agaacatcca gggaaactca 
001561 tgtcatgtca tacttgcagg tgaaatccac tctcaacagc gaatgtaagt ttcttaccga 
001621 ggtgacagaa aaagatcggg ctcttactgt atgctggaaa gggaaggata aaatcgtaac 
001681 tatcgatgaa gtcaagaagt gcttcagatc actgtctctg gaattcgccg atggcgataa 
001741 gaaggccact ttggagatcc cacctgagca ctacctcatt atctctgtaa gcattcaaca 
001801 actcaaatta cgatacaagc tagtaatgga caacaaatca ttgaaggaac aacaactaac 
001861 atcctttgtg tgtttgtggc agcaagaggg ccatgtgtgc ttgggcatcc ttgatggatc 
001921 gaaggagcat ctgtcgttag ctggaacaaa cttaattgga ggtatgaagt tcagacattc 
001981 aaacatgctc accaccatat gcataatctt tgtaattaac atttcgattg attactgttc 
002041 tacaggaatt acaatgctgg atcagatggt catatatgac agcgagagat cgctgctcgg 
002101 atgggtcaat tatcagtgcg atagaattcc ccgttctgag tctgcgatca cttcgcgtct 
002161 ctgaatgaac tgaaaaccag aatacaggga ggatagatgg aaacagaaag ggacattcat 
002221 atcttagaaa agaaatgaat gataaagcat gtatgcttct gcccataaat aatgaaatga 
002281 agtaatattt tagc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs  
Acc. No. Clone Name Length
CJ673052 whms12c20 732 view details
/rice/oryzabase