cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK108860     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os11g0490900 ( IRGSP 1.0 )
RAP - Chromosome No. 11
RAP - Location, Length 19,497,978 -  19,501,548  ( + ) ;   3,571(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 19,497,978 -  19,498,533 ( + ) ;   556 (bp)
Exon 2 Location 19,500,931 -  19,501,548 ( + ) ;   618 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os11g0490900 Os11t0490900-01 002152B08 111713 002152B08 18252 LOC_Os11g29870.1 AK108860 12537 AP008217.2 255679674 BAF28291.1 113645150 NC_008404.2 297612483 NM_001074460.1 115485568 NP_001067928.1 115485569


Chromosome: 11 ,  position: 19,497,978 - 19,501,548 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 cttcgaattc tcaatctctc tcatcagctc gatctatcca actgagctat tctcgcttat 
000061 cgagctcgat cgatcgcttg gtcgagatgg agaacttccc gatactcttt gcgacgcagc 
000121 cgacgtcgtc ttctacctcc agctcctacc acttcatgag ctcctcttcc ggcagccatg 
000181 accaccgcca ccaccatgga ctacaggcag gcggcaacgg cggtggcggt ggtggaagct 
000241 tgagccatgg cttgttcatg gggtcgtcgt cgtcgtcaat taggatggag gagctctcca 
000301 actccaagca ggccggcgac gtcgtcgtcg acggtggtgc aacgaggagc ccacacggcg 
000361 gcgacggaga cggagctgcg ggcgacgacg gcggcgatgc gcaggcagcc gccgccggag 
000421 ggaggaagaa gggggagaag aaggagcggc ggccgcggtt cgcgttccag acgcgcagcc 
000481 aggtcgacat cctcgacgac ggctaccggt ggaggaagta cggccagaag gccgtcaaga 
000541 acaacaaatt cccaaggttt gtcattcatg tcatgtacat ccatccatgg attaattctc 
000601 caaataatga tcattttagt caattacacc tctcttcttc tttcttatct ttcttatctt 
000661 ttatctcttc tctgattgca taatcaattg gatagagatc acaattgatt gatcttgaat 
000721 taactattag gcaagctaat taattataag ctagatttct ttttcttgat cggtctttga 
000781 tgtttgattt tgggatgttt gctgggtatt atgatctttt tcgaggattg ctttttttta 
000841 ttggtttgga gtgtatgtaa tccgatccga tgcttttttc actaggggtt aagagaaagt 
000901 aggtgagatg gagtcccaat gaatcttcca agctctgcta gtggtttgct tacatgtgat 
000961 aatgacatat ctcatcctca tcatctagat gaaaaagact aatagtttca catgattttg 
001021 gtgggcatcg atccattcaa taaatagaga accgatggcg atcgactttg accagcaata 
001081 acttggatga ccatccaccg ttgtttctat tatctattaa atccgtatgt gtattatcct 
001141 aattcagtca ccatctttat atgctcccta gagaacaaag ttaaacgtgt aaagctcact 
001201 gtgagcttcc aagctcgaaa cgatgggtag gtcgtacgta gtttgctctg gtttatgacc 
001261 ataattagtt agttaatggt cctagcataa aatgttacta caatggtctt actaacacct 
001321 gaaagagtat taaatatttc ctatatgatt tataaattac acaattaatg aaatagaatc 
001381 tgcaaggttt atatatccaa gaaaattgct taatgtttct gctctttaat tgacacggat 
001441 atggcactgg tcatcggtca tttcttgtga ttaaaattgg ttgcctaaat atattagaga 
001501 aatctttatc attccaagaa atttgcctta tcctttttgt tgtaacacga aaggttttaa 
001561 ttctgtgaca cccttctacc ttttcttctc ttttctgaaa aatcttggaa actctgtcaa 
001621 gttgcaccaa aaacagcaaa gacgtgcaca aatatactct tccacatata aacagcagtg 
001681 ctccgcactt tgacatcatt cttttcagca gctatatttg gtaccaattt gtactggaca 
001741 cttcccatta gttgtattca ttttttcgta tcttggggaa tgtccaacaa cttttttttt 
001801 taacttttga ctggcggtgt atttgtgcaa aaactgtaga tatatcattt gttaaatcta 
001861 aaaaataatt gtgcttccta caaaatgatt gtccaacggg aaaaaaaagg ttcattttaa 
001921 aatgttttgc ctcttattta aaatacttaa atattttgaa taatttaaca ggcaaacagg 
001981 taataaacct gtttgaacac ctatcaacta tacactagtt ataaaattta gctatcaatc 
002041 ttgtgggcct aacgtaaatt aaattataat tcgatattta tctggatcat gttcaagctc 
002101 aaaagattat tgaatactaa atcataaaag caattataat ttatttaaat tagagagtta 
002161 tgaaaggtta ggtccatgca cagttgcaag accaattatc tgtcccgatc cctaaaataa 
002221 tatcccgttt atttcataat caaccatttt gtcctcacca taatagattt ggttattaaa 
002281 caatcactgt agtcttgtaa ttaggaaaat tgcaggtgta aattgtggaa aaaaaaggca 
002341 attgaattga ctagttatct aaaaaggttc tatctagctg gcctccatct ctctttagga 
002401 aagaagtgca ctatatatac aaacaaatca agaagtcaat taaacaagat tcaatcgatg 
002461 aagatttgga gaattatata tatatggttt gtaaacttag ctcatcattt tttttgagaa 
002521 acaaatcctt caaactacag ctggaaatta aatccatgtg tagacgcaat gcacaatagt 
002581 tagtacatag acgaccaccg gttaatagct tgcaacatct tattaaatat gtatgtaaga 
002641 tgaatataac accaactgtg tggtgtgaag tcgtggcatg tatgaattca tacaccaggg 
002701 ttcaattatg atacctacta attttacaca cgtgcatgca tatgcgattt tagtagaact 
002761 ttagtgggac cagggatttg ccaccgatct ctatgtcttt gagcgtgtgc tagagggcgc 
002821 actacctagg aatgtggtat gcatcttccg cgtagtaatg aaaaaaaata tttgctgtct 
002881 aatttctttc tcgatgaatt tgtatttcat cggtgcacga atctaaaatt aatgaatgaa 
002941 tgaatggatg caggagctac taccggtgca cgcaccaagg gtgcaacgtg aagaagcagg 
003001 tgcagcggct gtcgcgggac gagacggtgg tggtgacgac gtacgagggc acgcacacgc 
003061 accccatcga gaaatccaac gacaacttcg agcacatcct cacccaaatg cacatctact 
003121 ccggcctcac gccttcatcg gctgcgcatg cctcatcctc ctcacctctc ttcccttcag 
003181 ctgctgctgc tgcttcccac atgttccagt agctttagca aatttgatca tacacaacaa 
003241 attagttaca cgtacatata tgatcaatgc caatgccaca ctgtacatat gcagtgcatg 
003301 catggatcga tggatgttag caggaaaaat taagaggcta tgttaatttg tacattaaac 
003361 ttagatgagg tgcagtgtaa gagaaaacta gctagtgaat taataagcat atgcatgatc 
003421 gatcgagatt cagtggcaag caagattcgg tcacgcatgc agttcttttt aattgtttta 
003481 cttttttttg tcaactgtag gccagatgta ctagtgattg cacaactttt acaaagaaat 
003541 ttattcacaa gatcttgcac attttggttc t

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ895163 whthls5j01 667
more... (Total Hit Count: 3 )
/rice/oryzabase