cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK103181     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os11g0137000 ( IRGSP 1.0 )
RAP - Chromosome No. 11
RAP - Location, Length 1,684,099 -  1,687,348  ( - );   3,250(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 1,684,099 -  1,684,512 ( - );   414 (bp)
Exon 2 Location 1,684,836 -  1,684,912 ( - );   77 (bp)
Exon 3 Location 1,685,003 -  1,685,160 ( - );   158 (bp)
Exon 4 Location 1,685,261 -  1,685,346 ( - );   86 (bp)
Exon 5 Location 1,685,457 -  1,685,706 ( - );   250 (bp)
Exon 6 Location 1,686,103 -  1,687,348 ( - );   1,246 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os11g0137000 Os11t0137000-01 J033121I24 214029 J033121I24 8046 LOC_Os11g04190.1 AK103181 28245 AP008217.2 255679674 BAF27538.1 113644397 NC_008404.2 297612483 NM_001072225.1 115484062 NP_001065693.1 115484063 P0C0X5 PIN1B_ORYSJ


Chromosome: 11 ,  position: 1,684,099 - 1,687,348 bp

   Now loading


#
#
Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 ctcgctgctg ctgcttttgc ccaaagctgc acaacctgca ttgcctctcg cctgaccctc 
000061 ttgcctcatc tgtgtctccc cccttctctt tttcttcaac ccctctttat gctcgtttct 
000121 ccattgcagc tcacctccat ctcctattct cctcctcctt gttgaaggag ttcgtgtgcc 
000181 tctaccaaga acaagaagaa gcctcttgca tcggcagcca tgatcacggt ggtggacctg 
000241 taccacgtcc tgacggcggt ggtgccgctg tacgtggcga tgacgctggc gtacgcctcc 
000301 gtccggtggt ggcgcatctt ctccccggac cagtgctccg gcatcaaccg cttcgtcgcg 
000361 ctcttcgccg tcccgctcct ctccttccac ttcatctcca ccaacaaccc cttcgccatg 
000421 aacctccgct tcctcgccgc cgacacgctc cagaagctca tcgtcctcgc cctcctcgcc 
000481 ctctggtgcc gcctctccgc gcgcgggtca ctcgactggc tcatcaccct cttctccctc 
000541 tccaccctcc ccaacaccct cgtcatgggc atcccgctgc tcaaggggat gtacgccgcc 
000601 gccgccgacg tcgactccgg cagcctcatg gtgcagatcg tcgtgctcca gtgcatcatc 
000661 tggtacacgc tcatgctgtt cctcttcgag taccgcggcg cgcggcttct tgtcatggag 
000721 cagttcccgg acaccgccgc ctccatcgtc tccttccggg tggattccga cgtcgtctcg 
000781 ctcgccggcg gcggtggtgg agccgcggag ctgcaggcgg aggcggaggt cggggacgat 
000841 ggcaggatgc gggtcaccgt gcgcaagtcg acgagctcgc gctccgaggc ggcgtgctcg 
000901 cacgggacgc agtcacactc gcagtccatg cagccgcgcg tctccaacct ctccggcgtc 
000961 gagatttact cgctgcagtc gtcgcggaac ccgacgccgc gtggctccag cttcaaccac 
001021 gccgagttct tcaacatcgt cggcaacggc aagcagggcg acgaggagaa gggcgccgcc 
001081 ggtggcgggg gccactcgcc gcagccggtg gtggggaaga ggaaggacct gcacatgttc 
001141 gtgtggagct caagcgcctc gccggtgtcg gagcgcgccg ccgcagcagc agctggcgcg 
001201 gtgcacgtct tcggcggtgg tggcgccgac cacggcgacg ccaaaggtga cgacaccttt 
001261 ttggatcatc ttttcgtgca ctttgacttc cctttttgtt tgcccgcgtg tattacactg 
001321 ttgtttgctt ctgcgcaatt aatcactctt gtcttgtgct cttgaccatc cgatcagtag 
001381 aatcaacggt ccagatcaca ctagtctgct cgttgtttgg agaactcgac agcgcataca 
001441 tatttaatac tacattcttg aagtgatttt tttttcacaa acttactttc ttgaattgtt 
001501 acttttctga tcttaacagt gacattgact gttaactgct aagtatagat ggatatgcag 
001561 agttgaattg tactgttaag acaaaatctt aacagtaaac tactgatttg acaaaagaga 
001621 atgttctttg atggatgcac aggagctcag gcctatgatg agtacagttt cgggaacaag 
001681 aacgagaagg acgggccgac gctgtccaag ctggggtcca actcgacggc gcagctccgg 
001741 ccaaaggacg acggcgaggg gatggcggcg gcgatgccgc cggcgagcgt gatgacgagg 
001801 ctcatcctga tcatggtttg gaggaagctg atcaggaacc ccaacactta ctccagcctc 
001861 cttggtgtca tctggtccct cgtctcctac aggttaatta agcaaacatt ttactcacaa 
001921 ttttcacatt gacatgttca tcattagcca tctctgtttg ctgcatgttt gttgatcttg 
001981 tgaacaatgt gatgtaattc aggtggggga ttgagatgcc agccatcatc gcccggtcga 
002041 tttcgatcct gtcagatgca gggcttggaa tggccatgtt cagcctaggt ttgtttgttc 
002101 atctctgata catatgataa attgctgtaa ttttacatgc gttccatgta ggactgcaaa 
002161 taactgaatt gtgttttggt ttttgcagga ttgttcatgg cattgcagcc acggatcatt 
002221 gcctgtggga actcccttgc ttcgtatgcc atggccgtca ggttcctcgt gggtccggcc 
002281 gtcatggctg ccgcctccat cgccgtcgga cttcgcgggg tgcttctgca cattgccatt 
002341 gttcaggtaa gctgcaagtt caggcttctg caccaaaatg catccttaac tgcaaaagaa 
002401 tctatcgtaa ctcaacaatt gtcattgaat tctcaggccg ctcttcctca aggaatcgtg 
002461 ccctttgtgt ttgccaagga gtacaatgtt catcctaaca ttctgagcac agcgtatgat 
002521 ctctttacca tcttttcttt ttcagtattg gaaaaatgtc cccattttga ggtttctttt 
002581 cttttatacc cagaaatctc tcgccctgtt tcccggttcc cttttccatt gtatcacata 
002641 tgccatgcac tgaattttct gaaaaggggc gcatcttgca gcttttgatg attcctaatc 
002701 atattgtttt agactaagaa agccatttta ctcatgattt atcatccaca aaggcagagt 
002761 ccataacact accattaacc ataattgtat gctcatgatt ttgtatctga catgaccatg 
002821 aactcttgtt ctgcagcgtg atattcggga tgctgattgc tctccccatc acattggtct 
002881 actacatact gctggggctc tgaagagctc tccaagtctc aactcaactg tgcaagaact 
002941 tgatgttact gacagtttga ttaggattta tggttctgtt ttagttgctc agattttgtt 
003001 tggatgatag gtcagcttag tgatgctagt tagacaatta tccgaggact tttgggttca 
003061 agtgacggcc agccacggtt tctgattgaa gattaggaac atagacatca cattagtgac 
003121 aacaggcatc taatttgtaa gacattgaga aggtctgttt caaattactg acaatgtagt 
003181 aagacattga acagtgctta taagcttatt tagcattcca ataactgatg gtaatgcact 
003241 taaaggagct

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs  
Acc. No. Clone Name Length
CJ798563 whsct14n21 587 view details
/rice/oryzabase