cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK102560     Link to RAP-DB ( IRGSP 1.0 / Build5 )
RAP ID Os11g0247300 ( IRGSP 1.0 / Build5 )
RAP - Chromosome No. 11
RAP - Location, Length 7,961,403 -  7,964,247  ( + ) ;   2,845(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 7,961,403 -  7,961,583 ( + ) ;   181 (bp)
Exon 2 Location 7,962,476 -  7,962,710 ( + ) ;   235 (bp)
Exon 3 Location 7,962,797 -  7,963,167 ( + ) ;   371 (bp)
Exon 4 Location 7,963,280 -  7,964,247 ( + ) ;   968 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No
KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
Tigr ID cDNA
Accession No
RiceXPro
FeatureNum
Genomic Nucleotide
Accession No
Genomic
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
UniProt
Accession No
UniProt Entry
Name
Os11g0247300 Os11t0247300-01 J033097H22 213408 J033097H22 14709 LOC_Os11g14220.1 AK102560 33301 AP008217.2 255679674 BAF27976.1 113644835 NC_008404.2 297612483 NM_001074145.1 115484938 NP_001067613.1 115484939 Q53M52 TBA2_ORYSJ


Chromosome: 11 ,  position: 7,961,403 - 7,964,247 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 agagaaaggc gtcttcgtac tcgcctctct ccgcgccctc ctccgccgcc gctcgccgcc 
000061 gttcgtctcc gccgccaccg ccgccgccat gagggagtgc atctcgatcc acatcgggca 
000121 ggccggtatc caggtcggga acgcgtgctg ggagctctat tgcctcgagc atggcatcca 
000181 ggtaaaacaa acaaaaacgg atctgatgct tccattcctc cgtttctcgt agtagcgcgc 
000241 ttcgatctgt gggtggatct gggtgatcct ggggtgtggt tcgttctgtt tgatagatct 
000301 gtcggtggat ctggccttct gtggttgtcg atgtccggat ctgcgttttg atcagtggta 
000361 gttcgtggat ctggcgaaat gttttggatc tggcagtgag acgctaagaa tcgggaaatg 
000421 atgcaatatt aggggggttt cggatgggga tccactgaat tagtctgtct ccctgctgat 
000481 aatctgttcc tttttggtag atctggttag tgtatgtttg tttcggatag atctgatcaa 
000541 tgcttgtttg ttttttcaaa ttttctacct aggttgtata ggaatggcat gcggatctgg 
000601 ttggattgcc atgatccgtg ctgaaatgcc cctttggttg atggatcttg atattttact 
000661 gctgttcacc tagatttgta ctcccgttta tacttaattt gttgcttatt atgaatagat 
000721 ctgtaactta ggcacatgta tggacggagt atgtggatct gtagtatgta cattgctgcg 
000781 agctaagaac tatttcagag caagcacaga aaaaaatatt tagacagatt gggcaactat 
000841 ttgatggtct ttggtatcat gctttgtagt gctcgtttct gcgtagtaat cttttgatct 
000901 gatctgaaga taggtgctat tatattctta aaggtcatta gaacgctatc tgaaaggctg 
000961 tattatgtgg attggttcac ctgtgactcc ctgttcgtct tgtcttgata aatcctgtga 
001021 taaaaaaaat tcttaaggcg taatttgttg aaatcttgtt ttgtcctatg cagcctgatg 
001081 gacagatgcc cggtgacaag accgttgggg gaggtgatga tgcttttaac accttcttca 
001141 gtgagactgg tgctgggaag catgtccccc gtgctgtctt cgtcgatctt gagcctaccg 
001201 tgattgatga ggtgaggact ggtgactacc gccagctctt ccaccctgag cagctcatca 
001261 gtggcaagga ggatgcagcc aacaactttg cccgtggtca ctacaccagt aagttccatc 
001321 tttactacta tctgttcaca atttctggaa atgtgattgt ttggatgtct aacatgtggt 
001381 gccgttcgtt tcagttggca aggagattgt tgatctgtgc cttgaccgca tcaggaagct 
001441 tgccgacaac tgcactggtc tccagggctt ccttgtgttc aacgctgttg gaggaggaac 
001501 gggctccggt ctcggttccc ttctccttga gcgtctctct gtggactatg gcaagaagtc 
001561 caagctcggg ttcaccgtgt acccgtcccc tcaggtctcc acctctgtgg ttgagccata 
001621 caacagtgtc ctctccaccc actccctcct tgagcacacc gatgtcgctg tcctgctcga 
001681 caatgaggcc atctatgaca tctgccgccg ctccctcgac attgagcgcc caacctacac 
001741 caacctcaac aggcttgtgt cccaggtact gccctgcatc tttccttgca gcgctatgta 
001801 ctccagttat ttgctgtaag atcaatgtaa tgtgcaattt gtcttgacat catgtggcta 
001861 atgctaatgt gctgcaggtc atctcctcac tgactgcctc cctgaggttc gatggtgctc 
001921 tgaatgtgga tgtcaacgag ttccaaacca acctggtgcc ctacccgagg atccacttca 
001981 tgctttcctc ctacgccccg gtgatctcgg ccgagaaggc ctaccacgag cagctctccg 
002041 tggcggagat caccaacagc gccttcgagc cgtcctccat gatggccaag tgcgacccgc 
002101 gccacggcaa gtacatggcg tgctgcctga tgtaccgcgg cgacgtggtc cccaaggacg 
002161 tgaacgccgc ggtggccacc atcaagacga agcgcaccat ccagttcgtg gactggtgcc 
002221 ccacggggtt caagtgcggc atcaactacc agccgcccag cgtcgtcccg gggggagacc 
002281 tggccaaggt gcagagggcc gtgtgcatga tctccaactc caccagcgtc gtcgaggtgt 
002341 tctcccgcat cgacatcaag ttcgacctca tgtactccaa gcgcgccttc gtccactggt 
002401 acgtcggcga gggcatggag gagggggagt tctccgaggc ccgcgaggac ctcgccgcgc 
002461 tggagaagga ctacgaggag gtcggctccg agttcgacga tggtgacgag ggtgatgagg 
002521 gtgacgagta ctagagaggt tcagggttct tgcctggtgc cttggcaatg cttgattact 
002581 gctgctatcc tatgatctgt ccgtgtgggc ttctatctat cagtttgtgt gtctggtttt 
002641 gaaaaacatt tgcttttcga ttatgcaggg tttgcttgta gctttcgctg ctgtgacctg 
002701 tgttgtttat gtgaaccttc tttgtggcat ctttaatatc caagttcgtg gtttgtcgta 
002761 aaacgaagcc tctacttcgt aaagttgtgt ctatagcatt gaaatcgttt ttttgctcga 
002821 gaataattgt gacctttagt tggcg

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK250942 FLbaf96c10 1759
more... (Total Hit Count: 322 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ778335 whatl25o24 919
more... (Total Hit Count: 3031 )
/rice/oryzabase