cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK102475     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os11g0184900 ( IRGSP 1.0 )
RAP - Chromosome No. 11
RAP - Location, Length 4,281,836 -  4,283,652  ( - );   1,817(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 4,281,836 -  4,282,456 ( - );   621 (bp)
Exon 2 Location 4,283,005 -  4,283,300 ( - );   296 (bp)
Exon 3 Location 4,283,390 -  4,283,652 ( - );   263 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 UniProt
Accession No		 UniProt Entry
Name
Os11g0184900 Os11t0184900-03 J033094I01 213323 J033094I01 12151 LOC_Os11g08210.1 AK102475 12029 Q53NF7 NAC71_ORYSJ


Chromosome: 11 ,  position: 4,281,836 - 4,283,652 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 ttccaaaact ttcgaaagct tccattagcg actaatccag ccttcgttaa gggtgattag 
000061 aatttgatta atttcaaggc ctcagatcgg agattgaatg gagtgcggtg gtgcgctgca 
000121 gctgccgccg gggttcaggt tccacccgac ggacgacgag ctggtgatgt actacctgtg 
000181 ccgcaagtgc ggcggcctcc ccctcgccgc cccggtgatc gccgaggtgg acctctacaa 
000241 gttcaaccca tgggatctcc ccggtaagca agagcaaaag cagatcgaat cgaatcgagg 
000301 aaattgaagt cgaattcaaa ttcaattaat tggggatttg gaattgttgc agagagggcg 
000361 atgggagggg agaaggagtg gtacttcttc tcgccgcggg accggaagta cccgaacggg 
000421 cagcggccga acagggcggc ggggacgggg tactggaagg cgacgggggc ggacaagccg 
000481 gtggggtcgc cgcgggcggt ggcgatcaag aaggcgctcg tcttctacgc cgggaagccg 
000541 cccaagggcg tcaagaccaa ctggatcatg cacgagtacc gcctcgccga cgtcgaccgc 
000601 tccgccgccg cccgcaagct ctccaagtcc tcccacaacg ccctcagggt tagtatttac 
000661 ttcttttaat tacttacttc tcctaatcta atcatctctt gctttcaatc atttctcctc 
000721 accaacgaat ttacccccat tttatttttt aaaattctac aaggaaaaaa aacagaaaag 
000781 aaattgccgt atactgtatt tgttcatata gtggtctcaa tctagagagc tctaggaaga 
000841 tatgggcaaa tcaatcatca gtagaggttt gataaaatga tttttattta aaatttgaga 
000901 aaagaatttg aaaggtgtgc caaattggca agttgcagca cgcctgagtt gtcgctttcg 
000961 tagcatggct gtagccgcta ggtataggct cggatggcgt catggctcac gcacgcgcag 
001021 atagagacaa gcccgcgccc aacctttatc gaatttaacg tcacctcgga aaacgtaatc 
001081 acaccgaatt tatttaccaa aaacttttta ccaccaccac tcgcatgcat tccacatcaa 
001141 tcttgatcac tttgctaata atttcagttt tttttttggt taattttttt ttgcagttgg 
001201 atgattgggt gttgtgccga atctacaaca agaagggagt gatcgagagg tacgacacgg 
001261 tggacgccgg cgaggacgtg aagccggcgg cggcggcggc ggcggcgaag ggtggtcgca 
001321 tcggcggcgg cggcggcgcg gcggcgatga aggtggagct ctccgactat gggttctacg 
001381 accaggagcc ggagtcggag atgctgtgct tcgaccggtc ggggtcggcg gaccgcgact 
001441 cgatgccgcg gctgcacacc gactccagcg ggtcggagca cgtgctgtcg ccgtcgccgt 
001501 cgccggacga cttccccggc ggcggcgacc acgactacgc cgagagccag cccagcggcg 
001561 gatgcggcgg gtggcccggc gtcgactggg ccgccgtcgg cgacgatggc ttcgtcatcg 
001621 acagctccct cttcgagctg ccctcgccgg cggcgttctc ccgcgccgcc ggcgacggcg 
001681 ccgccttcgg cgacatgttc acgtacctgc agaagccgtt ctaattaacg gaacgtgacg 
001741 cctctgcaaa cgctaattag ctcactaacc actgtcaggt cgatcgtgta attcttttac 
001801 cagtctaggg tacagcc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BY846553 bart33b03 541
more... (Total Hit Count: 29 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ927495 whchan33e11 520
more... (Total Hit Count: 10 )
/rice/oryzabase