cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK101580     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os11g0546900 ( IRGSP 1.0 )
RAP - Chromosome No. 11
RAP - Location, Length 22,404,208 -  22,407,165  ( + ) ;   2,958(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 22,404,208 -  22,404,732 ( + ) ;   525 (bp)
Exon 2 Location 22,405,240 -  22,405,318 ( + ) ;   79 (bp)
Exon 3 Location 22,405,424 -  22,405,546 ( + ) ;   123 (bp)
Exon 4 Location 22,406,514 -  22,406,630 ( + ) ;   117 (bp)
Exon 5 Location 22,406,713 -  22,407,165 ( + ) ;   453 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 RNA Nucleotide
Accession No		 RNA
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os11g0546900 Os11t0546900-01 212422 J033050N17 5700 LOC_Os11g34450.1 AK101580 19204 AK101580.1 32986789 BAG95132.1 215715381 NC_008404.2 297612483 NM_001074599.2 297611973 NP_001068067.2 297611974 Q2R2W2 14334_ORYSJ


Chromosome: 11 ,  position: 22,404,208 - 22,407,165 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 agccgcgttc gcatccgccg ccgcagccgc agccgccgcc gccgacgccg acgaggagag 
000061 gaggagaggg aaggcgagag ggaggtaggt aggtaggcag ttagccatgt cgccggcgga 
000121 gccgacgagg gaggagagcg tgtacaaggc gaagctggcg gagcaggcgg agcggtacga 
000181 ggagatggtg gagtacatgg agcgcgtggc gcgcgcggcg gggggcgcct ccggcgggga 
000241 ggagctcacg gtggaggagc ggaacctgct gtccgtggcg tacaagaacg tcatcggcgc 
000301 ccgccgcgcg tcgtggcgga tcatctcgtc gatcgagcag aaggaggagg gccgcgggaa 
000361 cgacgcccac gccgccacca tccgctccta caggggcaag atcgaggccg agctcgcccg 
000421 catctgcgac ggcatcctgg ccctgctcga ctcccacctc gtcccctccg ccggcgccgc 
000481 cgagtccaag gtcttctacc tcaagatgaa gggcgactac cacaggtaag attcgatggc 
000541 cttgatctag tatgtgcgcg cggcgaatcg accaagaatt cgagatagga ggatttgtta 
000601 ggtcggtgaa ggtaacatgt agggagttat tgggggtgtg attaacttct aggatattct 
000661 tttttccttt gtttattata tgattggtct ctgggttaat taaggttgta cggtaggatt 
000721 tgatttgagt tgtgcaggtc caaatttaag atctaatggt agtttttttt atgggttgat 
000781 aggtgtatga gatcccttgt tactgtacag gtctatgttt aagtcgtggt ctttatatat 
000841 gatgttaaca tttcctcttg gcggtgaaaa agtcagaatt agatgtgatg tctgttaatg 
000901 gagcggttga atgctagttt tcttcatatt cttggggatc ttggcgctgc ctaggagttt 
000961 ggtaccgatt aaaggtgtga aaatttttca tcttgatgga tgtatgattt ctcttggtga 
001021 cgatttgtga aggtaccttg cggagtttaa gtctggcgac gagaggaagc aggctgcgga 
001081 gagcaccatg aatgcataca aggctgctca ggttggattt gtgataatat gttttttttt 
001141 tgtacatgtg gatgcaatgg ttaattggtt agtcttgtgg tttgaattta gttttttgtt 
001201 ttgcgtgtgt tggcaggaca ttgctctcgc agatttggct ccgacccacc ccataaggct 
001261 tgggcttgca ctcaactttt cagtgttcta ctatgagatc ttgaactccc ctgaccgtgc 
001321 ctgcaacctc gcgaagcagg tctgcttact ctacttctac atccacttcc attttcccct 
001381 ttaattttct attctgttag ttgcatcatg catcttcaat gtacatttct ttgtatgata 
001441 tattttcatg ccaagtattt atccactatt gattttgtac cattaaggac ctgctttcta 
001501 ctggaatact ggttatactg gagatatcat ggtggatgaa tggagctttt tttctttgct 
001561 tttgataagc atgaaagctg actttttcta gtggaagttg tacttgcatt tctttttatc 
001621 gaaaaggcat ccatgttgct cattctgaag atatatgcta ctttgtgagt gcatgaatga 
001681 taaattaatt tatactagaa acttaagctg caatcaggtt gtttctgtag ctgaaatccc 
001741 aaaacgtact attcaaatcc cttggcacct gttggatgca ttttttggct gattttcatg 
001801 acgagataca gtttatgaat gatgtataac ttatatgtta cattttgact gtaaactttc 
001861 aaggtgatgt tgatcaaatg gttgatattt ttattttctt gattctcctg atgttccttc 
001921 ttgtaatttg tgtctatata attttcattt gccatatacc catgttataa ttttgacaga 
001981 aatttcgcat gttccattta gactttgcat catgttgaac cttcacaatc ttaaaccaaa 
002041 tggttaaagt agtgtacctt tgttttggag cttggaacgg taaagaagtg agaattatgc 
002101 catttctgtg tgctgataga attcttgtga ctaactcgtt ctaagtgctg atacatttct 
002161 agttgcttca aataagtaga attagctata taagatgcga aggttgtttc tgttcttaag 
002221 taatagtgtg atcatatttt atttgacatt cacttaaaaa tcagaacacg gaacatatga 
002281 tttgaatgaa tccatgtttc ttgtaggcgt ttgatgaggc catatcagaa ctggacagcc 
002341 ttggtgaaga atcctacaag gacagcactt tgatcatgca gctcctgcgt gacaacttga 
002401 ctctgtggac ttcagatgcc aatgtgagtt tcctgagcca tttgatcgtt tctgtcctat 
002461 cttcgtggtt ctgatatcag tttttttgtt ttctcttttc tgcaggatga tggtggtgac 
002521 gaaatcaagg aagccgcagc tccaaaagag cctggggatc agtgagatga attcggacgc 
002581 cagtctgatg caccatctgt tgttgttggg gcaatggaca ttgatgtctt cggctttcag 
002641 tagctatctt ctagtacacg aactgtcgtc gcaccatcgc ggaggagacg atgatgttct 
002701 taaattactt aagtagttct gggtcacgct tttgttcagt tgataaatga tggctggatc 
002761 ctggttttct tgttccacga tgccagccac aggaaaaacc ctactattct gcactgttag 
002821 aatgctgtta tattaaccat gtttgacaag acattttcag tatgtttgta tgaccgtctt 
002881 ggaagtgttt ggttgaacct gtctcagggt ctttggtcca agacattatt cacctggctt 
002941 gcttaactcg ttttagag

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK252961 FLbaf179h23 1215
more... (Total Hit Count: 67 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ778866 whatl27a20 888
more... (Total Hit Count: 1293 )
/rice/oryzabase