cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK071366     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os11g0454000 ( IRGSP 1.0 )
RAP - Chromosome No. 11
RAP - Location, Length 17,473,490 -  17,474,378  ( - );   889(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 17,473,490 -  17,473,978 ( - );   489 (bp)
Exon 2 Location 17,474,074 -  17,474,378 ( - );   305 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os11g0454000 Os11t0454000-01 J023096D05 207233 J023096D05 6446 LOC_Os11g26760.1 AK071366 4505 AP008217.2 255679674 BAF28205.1 113645064 NC_008404.2 297612483 NM_001074374.1 115485396 NP_001067842.1 115485397 Q2R4Z7 DH16C_ORYSJ


Chromosome: 11 ,  position: 17,473,490 - 17,474,378 bp

   Now loading


#
#
Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 atcgatcaca agacacaaga tttttcactg atagaatagc aacacttggg tgagagatca 
000061 gacgcgtgtt tgagaagatg gagaactacc aggggcagca cggctacggc gccgaccgcg 
000121 tcgacgtgta cggcaacccg gtcgccggcc agtacggcgg cggcgccacc gctcccggcg 
000181 gaggccatgg cgtgatggga atgggagggc atcacgccgg cgccggcggg cagttccagc 
000241 cggtgaagga ggagcacaag accggcggca tcctccaccg ctccggcagc tcaagctcca 
000301 gctcggtacg ttcactgtcg tccattcata aatctaatta atcgcctcgc ttctgaattc 
000361 ctttatttaa tttgagttgt actcgtgtgc gtttgtgcag tcgtctgagg acgacgggat 
000421 gggagggagg aggaagaagg gaatcaagga gaagatcaag gagaagctcc ccggcggcaa 
000481 caagggcaac aaccagcagc agcagcagat gatggggaac accggcggcg cgtacgggca 
000541 gcaggggcac gccgggatga ccggcgccgg caccggcacc ggcgtgcacg gtgcggagta 
000601 cggcaacacc ggcgagaaga agggcttcat ggacaagatc aaggaaaagc ttcccggcca 
000661 gcactaaata agctcgaccg ggtcgtcacc aaatatgtcg tgatgtacgt gcagttttat 
000721 atgttgttga ataaactagc gtgaaatgcg agtgatggtg tcttctgcct tgggacggat 
000781 gacacattgt ctgttgtgtt ctcgcgtccg tgtcggtttt acccttgaaa tgtaatatgg 
000841 tgtgtgtaca cactaaggtt ttattgaagt gtgactttgt gcttgtgtt

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AV915237 bags13h22 528
more... (Total Hit Count: 18 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ637784 whec10l23 599
more... (Total Hit Count: 158 )
/rice/oryzabase