cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK069875     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os11g0499600 ( IRGSP 1.0 )
RAP - Chromosome No. 11
RAP - Location, Length 19,930,872 -  19,938,120  ( + ) ;   7,249(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 19,930,872 -  19,931,306 ( + ) ;   435 (bp)
Exon 2 Location 19,934,606 -  19,934,798 ( + ) ;   193 (bp)
Exon 3 Location 19,935,777 -  19,935,862 ( + ) ;   86 (bp)
Exon 4 Location 19,936,387 -  19,936,518 ( + ) ;   132 (bp)
Exon 5 Location 19,937,194 -  19,937,358 ( + ) ;   165 (bp)
Exon 6 Location 19,937,661 -  19,938,120 ( + ) ;   460 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No
KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
MSU ID cDNA
Accession No
RiceXPro
FeatureNum
Genomic Nucleotide
Accession No
Genomic
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
Os11g0499600 Os11t0499600-01 J023036D07 205627 J023036D07 5070 LOC_Os11g30560.1 AK069875 27695 AP008217.2 255679674 BAF28303.1 113645162 NC_008404.2 297612483 NM_001074472.1 115485592 NP_001067940.1 115485593


Chromosome: 11 ,  position: 19,930,872 - 19,938,120 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 attctcctca ctatttggtg cagcgacccc cacccaccca tcaattcctt cttccttcgt 
000061 ctcctcctct tctccctgca cactcgttgc tagctagctc acccataaat accacgccat 
000121 tggccacctc caatctccaa gctagttctc actcacacat ccctctcctc cctccgccgc 
000181 cgccgccgcc ggagctaagg aagacgacga cgcataggta gataatcgtc ggcggccatg 
000241 gctaaggagg cgttcgtgaa cgggttcctg agcgtgttca tgcacgtggg gctaacgctg 
000301 gtgctgctcg tctacctccc catcgccttc gcctgccgcg ccctgggcag gctgctcgtc 
000361 aggcccttcg tctccggcga ggacctccgc ggcaaggtcg tgctcgtcac cggcgcctcc 
000421 tccggcatcg gcgaggtacg tacgtagcca gcacagctga gcattgcaac tcattgtgtc 
000481 ctgcgccatc tgacttactt tcctctaacg tgtgtgtggg tcactgacat atgagctctt 
000541 tagatagcga gctcgaactc acatgtcagt gatttataaa gtcatggggt gtgtttagtt 
000601 cacgccaaaa ttgaaagttt gattgaaatt agaatgatgt gacggaaaag ttagaagatt 
000661 atgtgtgtaa aaagttttga tgtgatggaa aagttagaag tttgaagaaa aattttggaa 
000721 ctaaacaagg gctatatggt gggttaagtt agaggatgtt agtgatttgg attctttttt 
000781 ttctagctgt gtttgctgca tatatacaac ttttttttta ttatattagt tcttgattta 
000841 attagatact actacatggt ttataatgtt cagagtttat tttgttcgtg ctgggttttc 
000901 ttgaattttt tttctaaaaa aatgatattg aatggtggtt tgaaataatg gaaatgaatg 
000961 cattctaaca tatgtactcc tgatcacgaa tagaaatagg acagaattaa aagacacaag 
001021 gatatacatg gctctcgtga tttttaatgg gttcagtgca gtggctttta ttcattggta 
001081 cgatttggtg ctattaaaga cacaaccatg catatgagca aagctgaaaa gcagaacctg 
001141 tggatttgca tggttgcagg agtatatatc ttaattttgc atctgtgtcg actgtgacat 
001201 ggagtacgca ccaaggctag ctagcacaaa gttgacgtgg tagtaaaaaa atcaactaaa 
001261 atttcacgtt ggaacttaat ttggtctttg ttgttgcaac gacttctgcc aatatggttg 
001321 caattagatt tgacaagttt gatttaatta gttctgataa atgtttggtg acgatgataa 
001381 tttaatttat ttctatgcta ctaaataata tttgagatga taggtagaag tttatggacc 
001441 tcaatatata agtataagta gcatagataa tttgtgtgtt ccagaaaaaa aagtaaaaag 
001501 aaaatgaagt cggtacagtg ggtaagagcc aactcatgac aatttctctt tcctatagtt 
001561 ttatataatt aatatctatc tttcagttgt actgttcata taaatatata cagcttttat 
001621 ttcctatggt ttctctgtaa ttaatatata tagctttcca aaaagaaaaa taacatatcc 
001681 ggacttcaac tgtagctgat gatcatatca atgccaactc cagggtcctt gactatttct 
001741 ctctaaaaaa tattatttat tggaccattt tatatattaa agaaatataa aaccatttta 
001801 tgaccgcacc accattggac cgaaacaagc atttatatgc ataaaagcga aatatctaca 
001861 gcagcaagca tgggcgcgat acttcgtcta gaactagagc gtgtgtgcat ttaatctggt 
001921 tggtataatt aattgaaatt agtcgaccgt atatatacat gaatctaaca gtacaccgcg 
001981 cgccaaaaag gcattcatcg tcgaaatatc aaatgatgca tgtggtgaca aaatcaaatc 
002041 atcaactagg aggaaccgtt agtcccccag atacatttct gtggtagcta gattagtgag 
002101 ttgttgatat aatttaatta acaagttaat ttggtcaaag ttacctttaa gggatgggtc 
002161 ccacaaatga tttcttttgt tcggtaatag catttatttt gcaattcata cttaacatag 
002221 ttttcagttt aagtaaaccc atgaaatatc atatcattct tttttaattc tgaaccatat 
002281 tatctgtagt gctaagcgct aacatggaag tgttggagca ctgtagttaa gacatgttta 
002341 tctaagagca aaactaataa tacagccgac ttgttagcta taaggttctt tgcagccttc 
002401 gtcagctatt tacaattaat acaggtccac ttatctctct cacataattt tttttggttc 
002461 atgtgtttcc ctcttctctc ctcagtctaa gtatttagcc aacttactgt gtcctattac 
002521 acctgctctt aagcagagta tttaagctat agtcagatta ctctgattcc tagtaggcac 
002581 agaagcaata aatacaatcc gggaatccca ttaatttgga gcatggcctc tctcatcgac 
002641 ctctcctgga aacttgcttg gccataattc tagatatctg taggagtagc agataggcag 
002701 ccatggctgc ccccagtccc cagatgcatg tgatgataca gtcacgggag ttaaagatca 
002761 ttcatggcct gagagagatg agaggtcgtc tatactacta gtgatgaaat catcagtgaa 
002821 cccccatcaa tgatggccta tctactcgtc ctattttccc ttgaattctc ccattaattc 
002881 tttgacgtga acgtaagata cactgtgaag acgaagggca cgtacatgta cagccttgtc 
002941 aggacaagcc aagaaagtga gcactgtgtc ctctctatcg tgtgcagaag tacacagcga 
003001 aataagattt agcacttgtt tagttccaaa ctttttcttt aaacttctaa ttttttcatt 
003061 acatcaaaac ttttttacac atatagactt ctaacttttc catcacatcg ttctaatttc 
003121 aaccaaacta acttttaatt ttggtgtgaa ctaaacacac ccttatcgtc tcatgatttt 
003181 cgatcgtgtt tgtgtgtcct tgcttggaga agtccagaaa cgtcgtgaat cacacacgtt 
003241 tattaatttt tgggagttaa gagagaaaaa ggatcgaatt aataaggacg actgacccca 
003301 agaaatgata catatgcacg taacttgtac atgcgctaat tatgcaacgc tgacaacggt 
003361 taaatcatta acaaaaatcc atctggaaaa tcataagttg acaactcgtt tcagtcgaat 
003421 taacaacaat cagtcagttc aaactaatta aattgcttca aattaaaatt ttcctctttt 
003481 catgtaaaaa ttatactctt gttacacaga gcaagctagt ctacctttgg tttcatttgt 
003541 ttgacagaac cagtttaatt aatttcctca caaatagtag tacggagtaa ctatgagttt 
003601 ttgtttatta agtttaatta atttcttcac aaatagtagt gcactgtgtt tttgtttatt 
003661 aagttttttg tgtttgtcct ggatgaaaat taataaaata aaataaacat ggtatatatg 
003721 tttttttttt gcagcatcta gtgtacgagt acgcgaagaa gggggcgtgc gtggcgctga 
003781 cggcgaggac ggagatcgcc ctgcgcgcag tggcgaagac ggcgcgcgac ctcggcgcgc 
003841 cggacgtgct cgtcgtgccg gcggacatca ccaaggtcga cgacgccaag cgcgccgtcg 
003901 aggagaccgt cgcccacttc ggcaaatgtc agttaactcg atcagtacaa ctcctactcc 
003961 tataccgctt aattaataag aagtatttta cgttccttaa gatgagatac taattaaatt 
004021 ttacacttaa ttcttaatat acttattatc tatagatagc aaattttata ctaggggccc 
004081 gttcactttg atgccatttt caaccatacc atttttttaa agttataaaa aaatatctac 
004141 gtttagttgt tgccaaactt gataaatacg taaaaaatcc tgccaaaatt ttgacaaaaa 
004201 tagatcctgg gaaataggat acttctatgt atattctctc aagaataata aaattactcc 
004261 aatctggagg attaatatgt ccaaccatca acttgaccga acaagttatt aattgctctg 
004321 tttcaaaatt tgaggtattc aattttactg ctgatagtat agcgacgttg attttgtttc 
004381 gagtgatatg atggttcaga ccgagggctt ggggcgacgt tgtcctgcca acgacagctt 
004441 gatctgctta tggacagaaa ttgattatgc gtatatggct gtgtcgttct cccaagtccc 
004501 aagtggctaa ttaattaaga cctaatcttt taggatcctg aatgtctagt agctgagagg 
004561 atggaatggt tcaagtcatg gacttatcac ttatggaaga agatattaag gctaatactg 
004621 taacagtaat gagttggaaa agaattttgg ttatagtcta cacatgctta cgcactgtgc 
004681 tcttcatcat atggtgtcgt tatactcata gctaaagtca atggaatgga aattcgtagc 
004741 aagttttaat atgaatgctg cctgaacacg ttgctaattg ggatcgattt cttgatgaaa 
004801 tctcggaagt agctgaactg catgcagtga tctacagcga tagatgattt aagttagtta 
004861 ttgtcatgtg tactaattaa ttatggggta aattcaattc tgcagtgaat cacctggtgg 
004921 ccaacgcagg gatctggtcc agttgcttct tcgaagaaat taccaacata accgccttcc 
004981 acaacgtgat tgtgagttga ttaattatca cacgctagct ccttttgaca ttttcaacat 
005041 ttttgccacc cccagcagtt ctcattatca ccattaaaat cttagtttaa acattagcac 
005101 atctgaaatt tttgagtgag tcgtttcctc ttgttcacac acaaaaaaaa aacatactat 
005161 atgaaaatca ttttcctcac agctgaccat ggtcccttat attatatcat ttatttggtc 
005221 caacgacgta cccaccagta ataaaatcag tggtctccca gagcttggat ttcaaaagga 
005281 gaccagattt tatagcagtg tttagttcag cgtaaagttt ggattttggt taaaattaga 
005341 gatgatgtga ctgaaaagtt gtgtgtgtat gaaaggttga tgtgatggaa aaggactgaa 
005401 gtttggatcc aaactttgga tctaaacaca gcctagttgt ggttaaccat cgatcagttg 
005461 ttaattaatt cttctcttat ttatagctcc ttaatgcaca cacgattttt tgcaggatct 
005521 caacttctgg ggcgccgtgt acccgaccta cttcgcgttg ccgtacctga aagccagccg 
005581 tggcaacatc gtcgtcacct cctctgtcgc cggcagggtc ccgacggcca ggatgagctt 
005641 ctacaacgta agcagcttaa ttagcagaga ctaattaaat taattactta ttactagtga 
005701 tactaattgc atgattaagt aattgatcca tgcctctgtg gcaattaaag tagtagtact 
005761 actcctactc aggttgtagc aataagtttc gatcagctca cctaaccaat tcaattaggt 
005821 gcaccaatac cccaactata gcccggggtg atggattatg cgtatggttg gatatctgcc 
005881 aaagctaaac tcacacatta gtgagagagg tccatctcac aaagtatatg atagcttagc 
005941 ttagctagca agccaggatc tagctgatag ctagcaataa ccccctgtta tggttcactg 
006001 attatcctac atgtgtcacg cccaatagtg gcggcaagta gcaggggctc attgactact 
006061 cattccatgt tggttcacta tatgtatagt tcacatgtat agtactatgc atggattgca 
006121 acattccctg tagttctagc atcacactca tctcattaat taatcagttt ttgtccctac 
006181 atttgatcac caattggaca cagatcaaga aaaaattttg ggttggcgcg tggtccatag 
006241 tactaatatc gtatgtgctt aaaaaaatat tcttaaaaaa aaattgtacg cttgatgctt 
006301 ataactatta ttattattac aggcgagtaa gggcgcggtg atcaggttct acgaaaccct 
006361 aagggctgag ctgggctcac atgtccgtgt caccattctc accccgggct atgtcgtctc 
006421 caacctcacc atgggcaaag gcatccagaa ggacggccat gtcggcattg acgaggaggc 
006481 tcgcgacgta agatctcgat cgattatata tatacttgat ttttagttgt acgtatgatg 
006541 aagaaccttt acgatgatct ctactaagta gtattaaata atcattatta tcatcagtat 
006601 aaattaaaat tttggaacga atttttcaaa atttcggtaa tttccaaccc cctgcaagca 
006661 aattttttgg attttctaaa aatttctgaa tttgataata atttatttaa attcaataaa 
006721 aatatgttga tttttttgaa aaaaccttaa taattagaaa tatccgaaat tttaatgtgg 
006781 ggggtgcaga tcaatgtggg gccgctgccg gtggggaaga cggagacgct ggcgaaggtg 
006841 gtggtggcgg cggtgcggcg gggcgactac tacgtgacat ggcccgggtg gtactggccg 
006901 ttccacatgg tgatgtgcac ggcgccggag ctcgtcgact ggttctcccg gaccttctac 
006961 gtctccaagt ccagcgacca cgatggcgac gccctcagca agaagatcct cgaggccgtc 
007021 ggcggcaaga agttcctcta ccccaagacc atccgcagcc atgccatcgc cgctagctaa 
007081 tataatgctc atatatcaca ctgattgatc gatccatcca agctatagtt gcaacctacc 
007141 tatatatata taaacttttt ttatacatga tgatatcatg atcttttgat aatgatgatt 
007201 ggtttgtttt agcataagaa atacttcagt taaagaggat tgggagatg

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ702131 whsd7o21 622
more... (Total Hit Count: 14 )
/rice/oryzabase