cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK065936     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os11g0523800 ( IRGSP 1.0 )
RAP - Chromosome No. 11
RAP - Location, Length 21,081,139 -  21,087,426  ( - );   6,288(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 21,081,139 -  21,081,592 ( - );   454 (bp)
Exon 2 Location 21,081,693 -  21,081,890 ( - );   198 (bp)
Exon 3 Location 21,081,982 -  21,082,172 ( - );   191 (bp)
Exon 4 Location 21,082,724 -  21,083,667 ( - );   944 (bp)
Exon 5 Location 21,083,746 -  21,084,070 ( - );   325 (bp)
Exon 6 Location 21,084,161 -  21,084,280 ( - );   120 (bp)
Exon 7 Location 21,084,458 -  21,084,622 ( - );   165 (bp)
Exon 8 Location 21,084,711 -  21,084,801 ( - );   91 (bp)
Exon 9 Location 21,085,336 -  21,085,420 ( - );   85 (bp)
Exon 10 Location 21,085,536 -  21,085,706 ( - );   171 (bp)
Exon 11 Location 21,085,814 -  21,085,870 ( - );   57 (bp)
Exon 12 Location 21,085,953 -  21,086,048 ( - );   96 (bp)
Exon 13 Location 21,086,886 -  21,087,025 ( - );   140 (bp)
Exon 14 Location 21,087,127 -  21,087,426 ( - );   300 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os11g0523800 Os11t0523800-01 201330 J013045A03 1264 LOC_Os11g32110.1 AK065936 14215 AP008217.2 255679674 BAF28351.1 113645210 NC_008404.2 297612483 NM_001074520.1 115485688 NP_001067988.1 115485689 Q2R3F5 ARFW_ORYSJ
Os11g0523800 Os11t0523800-01 201330 J013045A03 1264 LOC_Os11g32110.2 AK065936 14215 AP008217.2 255679674 BAF28351.1 113645210 NC_008404.2 297612483 NM_001074520.1 115485688 NP_001067988.1 115485689 Q2R3F5 ARFW_ORYSJ
Os11g0523800 Os11t0523800-01 201330 J013045A03 1264 LOC_Os11g32110.3 AK065936 14215 AP008217.2 255679674 BAF28351.1 113645210 NC_008404.2 297612483 NM_001074520.1 115485688 NP_001067988.1 115485689 Q2R3F5 ARFW_ORYSJ
Os11g0523800 Os11t0523800-01 201330 J013045A03 1264 LOC_Os11g32110.4 AK065936 14215 AP008217.2 255679674 BAF28351.1 113645210 NC_008404.2 297612483 NM_001074520.1 115485688 NP_001067988.1 115485689 Q2R3F5 ARFW_ORYSJ


Chromosome: 11 ,  position: 21,081,139 - 21,087,426 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gttttttttt tcttcttttt tctcgcttaa attcacccag taaaaaaaaa atttaaaaca 
000061 aaagagagga gaggagagga agaagaggag gtggtggagg aggaggagga gaagctgctt 
000121 gtgctgctgc tgcgaatcgg aggggaattc gagggggcgg ggggcgcgaa tccggcgggg 
000181 gaattcgcgc gattcgggcg tggccgcggg ggatgtgaag atctggtggg gtgatggcga 
000241 cggcggaggt cggcggcggc ggcggtgagg gggatgctgc tgccgcggcg gtggcgcgag 
000301 gtgagctcct ctcggtggtg ggtgggcgtg tgtgggtttg cgcgtgggtt ttttgtgggc 
000361 tggcttgtga tgccggcttt tgggctttgg gcttgcagca ggcggcggcg gcggaggagg 
000421 aggaggagga ggggaggacg cgctgttcac ggagctgtgg agcgcgtgcg cggggccgct 
000481 ggtgacggtg ccgagggttg gggagaaggt gttctacttc ccgcaggggc acatcgagca 
000541 ggtgagtccg agtccgagct cgaggtcgag cagagcgcgc gccgcccaat tcgggcgcgg 
000601 ggtggtggcg gtggcggcgg ccgcctttct cgcctctccg cgattccccg ctttttatta 
000661 gagagtttat tagttccatt tcgatttctc ttcctggtcc ttttccgccg tttgattttg 
000721 agagtttttt tggttttcaa ctctcttttc tctctcttcg tgtttctgtt gatccgagtg 
000781 gcgtcttcgg gtttgagctg ttttgaagcc actcgttttt tttcttcttg acttgttcaa 
000841 atgcttgagg ttttggtgtt tatgcgtcct agcggcgatg ggaatctttt aagataaatt 
000901 ttggggggaa tttgtctgtg ccgttggcga atttcgcttt cttgagtttg tgtcgtggaa 
000961 ttttggcggg ttttgagcat ttttggtgat gcggttttgg ggtttacgtt ttgcctctct 
001021 aaaattcgaa gttttttcca agttttttcg gttatactgt atgcaattct ctggttcgaa 
001081 ctaagtttcc gagttgtcgc agttgctgag tgtgagattg gaactatttg aatggggaat 
001141 tctgtagttt ttgtgccgga tcgcttcgcc tatgagtcga attcggcttc ttggttgcca 
001201 aaattcggaa ttctgtgttt tacttcgcaa aagaaaaaaa aactggggat tttcgtgctt 
001261 ggtactgaac tagtgataat ttgttcttcc tgcattcttg caaatgtatt ttttttcttg 
001321 gctggaatca gtgtttcggt ggctgatttt ggaattcttt gcctctgtcc attttcaggt 
001381 ggaggcctcg accaaccagg taggcgagca gcggatgcag ttgtacaatc tcccatggaa 
001441 gatcctgtgt gaggttatga acgttgagct gaaggtactt gctttgtgtt tcttgtgaat 
001501 tctgagagct ttcattcttg gttgtatgtg tggttgacat atagctctgt ttgtaggccg 
001561 agccagacac cgacgaggtt tatgctcagc tcactctgct tcctgaatcg aaggtaaaaa 
001621 aaaaaatgtc tccagtttgc acgctgtcac tgcttcatac attccgggat agaagttttg 
001681 agcgttttga aaggaaaaaa aatgttggtc tgttgtgtag caacaagaag ataacggctc 
001741 tactgaggag gaggtgcctt ctgctccagc agctgggcat gttaggccac gggtgcactc 
001801 attctgcaag acattgaccg cctcggacac gagcacacat ggcggcttct cggtgctgcg 
001861 acgccacgcg gacgaatgcc tcccaccact ggttcgtccc actggttctt tgacttgatg 
001921 ttgttttcag tgatgtactt gtagtcctag gtcttactag gatgcttgag ttgtagtgat 
001981 gatctttgct ttggcttctt gatcaggata tgagccgtca gcctccaaca caagagctgg 
002041 tggccaagga tctgcacggt gtggaatggc gctttcgtca catattcaga ggtgatcact 
002101 cttccaacat cgtacttatt tctctatttt ctgaaggacg tgtgatgctc actgctcttt 
002161 gctaatgaac acaagtttcc atgatatcat gactaggaga catctttaca ctgctcttgg 
002221 gttgatcgta tagtgtaaga acagttcttg catttgacta accccttcat ttataatatt 
002281 ggtattaaat gcactttttt ggtacgatgc ctatcccgta ttatcttgat ggctttatta 
002341 gagggaccag tttgtgcttc ccacaatttc ttgtgcattt ttgttctttg catgggccta 
002401 cacttgatgg agtatggata actacaactt ttgttggttg atgctgcagt ggtcgtgctc 
002461 tagtttctta ggacaagtag tttatgcttt catatgccct tgtgatgtaa gagttgtgct 
002521 aattgattat gttgtcctgc ccgagtttcg attgcaccta ggttagaagg aagttaattt 
002581 tttgcttcaa ctcttcttga gctatatctt tttgatcaac atcaggtcaa ccacgaagac 
002641 accttttgca gagtggctgg agtgtgtttg ttagtgccaa acggcttgtt gctggggatg 
002701 cctttatctt tctcaggttt gataatttga cacagtgttt gctttgtcta cctgtgcttt 
002761 cccctgtact gcttaataaa tatcccccta tatgatctgc acagaggtga gaacggggaa 
002821 ctgcgtgttg gagtcaggcg tgcaatgagg cagcaaacta atgttccatc ttcagtgata 
002881 tcaagccaca gcatgcatct tggggttctt gccacagcat ggcatgctgt taacacaggg 
002941 accatgttca ctgtctacta caagcctagg tttgttgtga agtttttctg gattttatgc 
003001 acatgatttt atttatgcac tttgggagca ttgtctgttt acttgtcacc tgaattctga 
003061 actgatcttg ctatgtgata gaattaaatt tgtccgattg tgctagcact taaacgctat 
003121 cgctgaaatc ttctattttt catcaggaca agtccagccg agtttgtggt cccttacgat 
003181 cgctatatgg aatcactgaa acaaaattac tccattggga tgagatttaa gatgaggttt 
003241 gaaggtgaag aggctccaga gcaaaggtag cacttagatg gatatgcatt ctacttttga 
003301 caggtgattc ctctgtatct gaatcaaccg attaatcttt aatgctcatg cattagattc 
003361 actgggacta ttgtcggaat gggggattct gatccagctg gctggcctga atcaaaatgg 
003421 cgctccctta aggtttattt ctttcgccac tttccattta aataacattt attttctgag 
003481 aatttcttac agatttttgt gttacttagg tgagatggga tgaagcttct tccatacctc 
003541 gccctgaaag agtttctccc tggcaaatag aacctgctgt aagccctcct cctgtcaacc 
003601 cactaccagt tccaagaacc aagaggcttc gtccgaatgc taccgctttg ccggctgact 
003661 cttctgctat agcaaaagaa ggtcagacct tgtcatcaat atgaaatcta cagtatagct 
003721 tcgttgtctt tactaatgca cgtcttttct tcaatctagc tgctacgaaa gttgtggtcg 
003781 agtctgaacc aaatggtacg caaaggacct tccagacaca agagaatgca accccaaaaa 
003841 gtggtttcgg caatagcagc gagttagaaa gtgctcagaa atcaatcatg cgtccatctg 
003901 gatttgatcg tgagaaaaat aacactccca tacagtggaa gctaggttca gatggtcgga 
003961 tgcagatgag caagcctgag agttacagtg agatgctatc tggatttcag ccacctaaag 
004021 atgtacaaat cccacagggt ttctgttctt tacctgagca gattactgca ggccattcta 
004081 acttctggca cacagtaaat gctcagtatc aagatcaaca gagcaatcac aatatgttcc 
004141 ccagctcatg gtccttcatg cctccaaata ctcgccttgg attaaacaaa cagaactatt 
004201 caatgattca ggaagctggt gtgttgtctc aaaggcctgg aaatacaaag tttgggaatg 
004261 gagtttatgc tgcactgcca ggccgaggta ctgagcaata ctcagggggt tggtttggcc 
004321 atatgatgcc aaattcccac atggatgata cacagccacg cctgatcaag cctaaacctc 
004381 tggttgttgc ccatggtgat gttcagaaag ctaaaggtgc ttcatgcaaa ctatttggaa 
004441 ttcaccttga cagcccagcg aaatctgaac ctttgaaatc tccatcaagt gttgtatatg 
004501 atgggacgcc acaaacacca ggtgctactg aatggcgccg accagatgta actgaagtag 
004561 agaaatgttc tgatccttct aaggccatga agccacttga tactccgcaa ccagactctg 
004621 ttcctgagaa gccttcttct cagcaagctt cacgaaacat gtcgtgcaaa tcacaaggtg 
004681 tatcaactag aagctgcaag aaggtaccac tttcttgtta ttattgcact tatcacctct 
004741 ttgcaatctc caagttcttc cttgtgaatg attttaaata attctccaac aagttttcct 
004801 cccctcctag atatgcccaa taagattaat tttggagcac ctttggatat acttcctccg 
004861 tttcatatta taagactttc tagcattgcc cacattcata tatatatata tgttaataaa 
004921 tctagacata tatgtgtgcc tatattcttt aacatctata tgaatgtagg caatgctaga 
004981 aagtcttata acctgaaacg gaggtagtat tatatttcaa aggtccaaat gtacaaactt 
005041 gctcagtatt tttttttgcc aaagttaata tagctcaact cattctctaa tctctcctat 
005101 agatgcataa tcaaaccctt gtttcttaca tataatcttt ccttcggaag catgtttggc 
005161 actacttata ccatcctcaa gtgctcagct taattatttt ttctagattt tccctgtttt 
005221 ccaacatgat ggttgataaa ctatacattt ccaggtccac aagcaaggca ttgcacttgg 
005281 caggtctgtg gaccttacaa agtttaatgg ctatgaagag ttgattgctg agctggatga 
005341 catgtttgat ttcaatggtg aactgaaggg tcctaagaag gagtggatgg ttgtctacac 
005401 tgacaacgaa ggtgacatga tgctagttgg ggatgatccc tggatgtgag ttaactcata 
005461 aatgctttcc tcattcgctg atctgattta atgacatcac aaatgctgac tgcatcggac 
005521 aatcattctt gaacagtgaa ttctgcgaca tggttcacaa gatcttcatc tacacaagag 
005581 aagaggttca gcggatgaat ccgggaaccc tgaactcaag atcagaagat agtcatgcta 
005641 attcaatgga aaggggctca gtcggcagag aaatgcgagg ctgcttgtca acctcgtctc 
005701 ttaattctga gaactgctaa tgctttccca tctggtaacg tgagtagtgg catttcacct 
005761 ttcttcacta taactagtaa agtataaacg gcctccggtg ctcatctttg ttccatcatc 
005821 ttgctttctg gcaggtcttt tgaagtaaca tgggagacaa gaacgcgatg catcgttata 
005881 agaaaatgca tttcgtagtg gagttaatgc tttttttccc cctttgatgt attggataag 
005941 ctcaaagtac cctatttgta gatggtgctt gtccttggtg gtcaagttgc actcttattt 
006001 gctgcagttt tggttttcta ttttggtgag gtaagttgtc agccgccagt cctaccatat 
006061 aaatgttggt atgcgtagaa aagtaagctc agccctccca ccctgcactt cctctctctc 
006121 agcactaagc tgccacctcc ttgtaaatag cccctgttta attgagtcta atatattatc 
006181 taccttaact gacattcctt tgtttcatct tgctaaatta tagcagtagc ctggtaagat 
006241 tattgtagcc caaattaaca tgtgatctga gattttattt ttgctttc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BJ478000 bah41j13 513
more... (Total Hit Count: 4 )
Hit Wheat ESTs
Acc. No. Clone Name Length
BJ301505 whyd10o04 613
more... (Total Hit Count: 8 )
/rice/oryzabase