cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK063517     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os11g0454200 ( IRGSP 1.0 )
RAP - Chromosome No. 11
RAP - Location, Length 17,481,913 -  17,482,879  ( - );   967(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 17,481,913 -  17,482,415 ( - );   503 (bp)
Exon 2 Location 17,482,511 -  17,482,879 ( - );   369 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os11g0454200 Os11t0454200-01 001116H03 106515 001116H03 12246 LOC_Os11g26780.1 AK063517 7481 AP008217.2 255679674 BAF28206.1 113645065 NC_008404.2 297612483 NM_001074375.1 115485398 NP_001067843.1 115485399 Q2R4Z5 DH16B_ORYSJ


Chromosome: 11 ,  position: 17,481,913 - 17,482,879 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 atcgatcgac ggctttgaca caagtcatct tactgatagc aacaacacta gctggaacac 
000061 ttgggtacac gagttcaggg atctagccag agctaattaa gcggagagtt attagctttt 
000121 aatttgcttg agaggatgga caactaccag gggcagcacg gctacggcgc cgaccgcgtc 
000181 gacgtgtacg gcaacccggt cggcgccggc cagtacggcg gcggcgccac cgcgcccggc 
000241 ggaggccacg gagcgatggg gatgggaggt catgccggcg ccggcgccgg cggccagttc 
000301 cagccggcga gggaggacca caagaccggc ggcatcctcc accgctccgg cagctcaagc 
000361 tccagctcgg tacgttcact gtcgtccatt cataaatcta attaatcgcc tcgcttctga 
000421 attcctttat ttaatttgag ttgtactcgt gtgcgtttgt gcagtcgtct gaggacgacg 
000481 ggatgggagg gaggaggaag aagggaatca aggagaagat caaggagaag ctgcccggcg 
000541 gcaacaaggg caacaaccac cagcagcagc agatgatggg gaacactggc ggcgcgtacg 
000601 ggcagcaggg ccacgccggg atgaccggcg ccggcaccgg cgtgcacggt gcggagtacg 
000661 gcaacgccgg cgagaagaag ggattcatgg acaagatcaa ggagaagctg cccggccagc 
000721 actaaattaa taagcttata taattgacag ccggggcaac acgtcgtcat gtgtgtagta 
000781 gtatctatcg ttttaatctg cggaataaat gacgtgcact gcagtgtata gcgtcctcga 
000841 agagaatagt actactgttt gggcgttcgc acgtgttggg ttgtacctat agcttgtgat 
000901 gccattgcaa gctttgtatg gtgtgtgtgt acacaggttt ttagtgaagt gtgtgacttt 
000961 gttttgg

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AV915237 bags13h22 528
more... (Total Hit Count: 18 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ637784 whec10l23 599
more... (Total Hit Count: 158 )
/rice/oryzabase