cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK063399     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os11g0184900 ( IRGSP 1.0 )
RAP - Chromosome No. 11
RAP - Location, Length 4,281,147 -  4,283,653  ( - );   2,507(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 4,281,147 -  4,282,456 ( - );   1,310 (bp)
Exon 2 Location 4,283,005 -  4,283,300 ( - );   296 (bp)
Exon 3 Location 4,283,390 -  4,283,653 ( - );   264 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os11g0184900 Os11t0184900-02 001114H12 106389 001114H12 12151 LOC_Os11g08210.1 AK063399 8302 AP008217.2 255679674 BAF27764.1 113644623 NC_008404.2 297612483 NM_001072451.1 115484514 NP_001065919.1 115484515 Q53NF7 NAC71_ORYSJ


Chromosome: 11 ,  position: 4,281,147 - 4,283,653 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 attccaaaac tttcgaaagc ttccattagc gactaatcca gccttcgtta agggtgatta 
000061 gaatttgatt aatttcaagg cctcagatcg gagattgaat ggagtgcggt ggtgcgctgc 
000121 agctgccgcc ggggttcagg ttccacccga cggacgacga gctggtgatg tactacctgt 
000181 gccgcaagtg cggcggcctc cccctcgccg ccccggtgat cgccgaggtg gacctctaca 
000241 agttcaaccc atgggatctc cccggtaagc aagagcaaaa gcagatcgaa tcgaatcgag 
000301 gaaattgaag tcgaattcaa attcaattaa ttggggattt ggaattgttg cagagagggc 
000361 gatgggaggg gagaaggagt ggtacttctt ctcgccgcgg gaccggaagt acccgaacgg 
000421 gcagcggccg aacagggcgg cggggacggg gtactggaag gcgacggggg cggacaagcc 
000481 ggtggggtcg ccgcgggcgg tggcgatcaa gaaggcgctc gtcttctacg ccgggaagcc 
000541 gcccaagggc gtcaagacca actggatcat gcacgagtac cgcctcgccg acgtcgaccg 
000601 ctccgccgcc gcccgcaagc tctccaagtc ctcccacaac gccctcaggg ttagtattta 
000661 cttcttttaa ttacttactt ctcctaatct aatcatctct tgctttcaat catttctcct 
000721 caccaacgaa tttaccccca ttttattttt taaaattcta caaggaaaaa aaacagaaaa 
000781 gaaattgccg tatactgtat ttgttcatat agtggtctca atctagagag ctctaggaag 
000841 atatgggcaa atcaatcatc agtagaggtt tgataaaatg atttttattt aaaatttgag 
000901 aaaagaattt gaaaggtgtg ccaaattggc aagttgcagc acgcctgagt tgtcgctttc 
000961 gtagcatggc tgtagccgct aggtataggc tcggatggcg tcatggctca cgcacgcgca 
001021 gatagagaca agcccgcgcc caacctttat cgaatttaac gtcacctcgg aaaacgtaat 
001081 cacaccgaat ttatttacca aaaacttttt accaccacca ctcgcatgca ttccacatca 
001141 atcttgatca ctttgctaat aatttcagtt ttttttttgg ttaatttttt tttgcagttg 
001201 gatgattggg tgttgtgccg aatctacaac aagaagggag tgatcgagag gtacgacacg 
001261 gtggacgccg gcgaggacgt gaagccggcg gcggcggcgg cggcggcgaa gggtggtcgc 
001321 atcggcggcg gcggcggcgc ggcggcgatg aaggtggagc tctccgacta tgggttctac 
001381 gaccaggagc cggagtcgga gatgctgtgc ttcgaccggt cggggtcggc ggaccgcgac 
001441 tcgatgccgc ggctgcacac cgactccagc gggtcggagc acgtgctgtc gccgtcgccg 
001501 tcgccggacg acttccccgg cggcggcgac cacgactacg ccgagagcca gcccagcggc 
001561 ggatgcggcg ggtggcccgg cgtcgactgg gccgccgtcg gcgacgatgg cttcgtcatc 
001621 gacagctccc tcttcgagct gccctcgccg gcggcgttct cccgcgccgc cggcgacggc 
001681 gccgccttcg gcgacatgtt cacgtacctg cagaagccgt tctaattaac ggaacgtgac 
001741 gcctctgcaa acgctaatta gctcactaac cactgtcagg tcgatcgtgt aattctttta 
001801 ccagtctagg gtacagccaa aaaaccaaaa attaaccgtg ctcgatcgat cgatcgatcc 
001861 atggatcgat gatcgcctcc accggcagat caaaatcgaa gcaaaaaatc agggagaatt 
001921 cttggtactt ccagtacctc tcgtcgacac cacgtgtcgg gttttctgca ccgcggatcc 
001981 tcgctggccg catcgtaacg gcgagcgagg ttaaaaatag tggagaattc aagaacacat 
002041 ccctgatttt tgtttctgcc ggatggggag taccgtgagc atggtagaaa tgactggtaa 
002101 aattttcgtt gatgataggt agccagagtc gatgtaacca gtcgattttt tttttttttg 
002161 gttttagttg acatgccttc ctgatagatt cagaacaaac aatagagaag agaggagaaa 
002221 aaaacacaga ggagaaattc agagaccaaa gttcaaagtt ttggaatttt caggggcgcc 
002281 agcagctgat ggtattgtca gtcgtgtcta ggttcgtaga ggaaattaaa atgtagaaga 
002341 acgggtactt cagttcactt caggttcgtt cgtgccaaac aggtctctga cactttagtt 
002401 aggttttgat ttttttttct ctttttttct ggttttttgt cgtttggtaa tgtaatgtaa 
002461 gggtgattgc gacatggtat ttatgtgatt agagtcgctt tcagttg

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BY846553 bart33b03 541
more... (Total Hit Count: 29 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ927495 whchan33e11 520
more... (Total Hit Count: 10 )
/rice/oryzabase