cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK059463     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os11g0116300 ( IRGSP 1.0 )
RAP - Chromosome No. 11
RAP - Location, Length 728,517 -  731,758  ( - );   3,242(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 728,517 -  728,807 ( - );   291 (bp)
Exon 2 Location 728,917 -  729,143 ( - );   227 (bp)
Exon 3 Location 729,429 -  729,587 ( - );   159 (bp)
Exon 4 Location 729,685 -  729,774 ( - );   90 (bp)
Exon 5 Location 731,636 -  731,758 ( - );   123 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os11g0116300 Os11t0116300-01 001028D03 101461 001028D03 7966 LOC_Os11g02440.1 AK059463 8972 AP008217.2 255679674 BAF27432.1 113644291 NC_008404.2 297612483 NM_001072119.1 115483850 NP_001065587.1 115483851


Chromosome: 11 ,  position: 728,517 - 731,758 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 actcacgctc tttcgatctt cagctcctct ctatttctct cgtcaacaat tagcgctctc 
000061 tattcatcgc aaggagcaaa agcagtttca gttccaacct ccttctggtt ccattgctaa 
000121 gaagtaagtt aatctctctt tcttgcttcc ttctgatgga tccttgctag tagtagtatt 
000181 actccgagca tgtttaattt ggttgctacc tgagagaagc atgcctggac ttatgtcctg 
000241 tttgaatcca gggactaaat cacatagaat gtttgatatt aattagaagt attaaacgta 
000301 gactaatgac aaaacctatt ctataatctt agactaattc gcgagataaa tctattgagc 
000361 ctaattaatt catgattagc ctatgtgaag ctaccgtaaa aatatgctaa ttatggatta 
000421 attaggctta taaaatttgt atcgcaaatt aactctcatt tatgtaattt gttttattat 
000481 taatttatat ttaatacttc tagttagtgt caaatatagt ccttgtcaca tcggatgttt 
000541 agacgctaat ttcgagtatt aaatatagac taattagaaa actaattgca taaatgagag 
000601 ctaattcacg agataaattt tttaagccta attaatctat aattagcaca tatttaatgc 
000661 tagcatcaca tagactataa tcatggatta attaggccta aaaattcgtc tcatgaatta 
000721 ggtcttattt atgcaattag ttttgtaatt agtctatgtt taatactcta aaatagcatc 
000781 taaacatcta atgtgatagg gactaaagtt ttaggctgtg tttagatcca ggggtgaaaa 
000841 gttttaccgt gttacatcga atatacggac atacatttga agtattaaac gtagtctaat 
000901 aacaaaacaa attacagatt tcgcctgtaa attgcgagac gaatttatta aacctaacta 
000961 attcatcatt agaaaatatt tactgtaaca ccatattatt aaatcatgga gtaattaggc 
001021 ttaaaagatt tgtgtcgatc ttgattggtt gctacccaag actgttctcc actggcctgg 
001081 cctgacgcat actccagcca tagaggcgtg caattagcgc ggccgatttc tgtcgcccga 
001141 ggctccaggc gtaaacaaat gcgtgcttta ccatcgaaat ctcaactgta cgaagtcatc 
001201 accgcgtgcc gccatcgcac gaggctgccc ctgatctgac gccactgcgt gaagcccaca 
001261 cctacctcaa tcgccaccgc cggcaagcga agccactgcc gtggtcgtcg ttgagcgaag 
001321 tccccgcgtt ggtcgagttt gtacgaagct tcgcgtgatc ccctttgccg gatccagctt 
001381 agagcgaagc ttcaattcag ctgatgctgc tgattttgct gatcgttatt gcgactttgg 
001441 ggatattttt ggaaagttag gtatgtagca tatggatttt gtgagatttt tcccgagacg 
001501 ccaagccgtt ttgtcgagat ttttgttctt cccgtctaat acttgagtta gcagtaatca 
001561 tctactcgat caggcagcag cagcaaacca aacaagcaac tcgtcaggtg gaacccatga 
001621 gtttgttgga gtgcaaattc ttcaggcgtg gtgctcaggt caccaaccaa acaggccttc 
001681 tgtctttcgt ccgtcttgag ggatatcaag aaaagacatt ctcatggttc taaaaaaaag 
001741 ggatatcaag aactcaaaaa gactttctca tgaatgaatg tatctaattc catctgaaac 
001801 tctggtggta gcttcatacc cacttcggac tttgcactag cttgtacatt tagagaaatt 
001861 ctgaaagtag tatgtgaagg ttgttgaaat atgcttatat acaaaacatg accatacatg 
001921 tactggtaat tacaagattt caatgcccaa ttagttgcat tttgcatgat tgttgtaagt 
001981 gcagtgggca cagagatagc caccgtggag gtggagggca tcccatttcc tcaggagata 
002041 accgtcagta agccattgtc actgcttgct aatggtaatt aattaatcta ctaacgaatt 
002101 aagctgttaa ctaatatcag attatcagta caacacaagc ctctaaacgc ctttgaaata 
002161 accaattgca ggcatcacag acattgagat ccatttcctt cagatcaaat acaacgccat 
002221 cggggtgtat cttgaaaagg acaatgtgct agcgcatttg gagagttgga agggcaagaa 
002281 ggccgaggag cttgtgcagg atgatggctt ctttcaggcc ctagtttctg gtaactaaaa 
002341 tgacccccat cattcagatt ttgcacttca gaatctgtaa aagctgattt agaattgcct 
002401 gttctacagt atgtcaatgc cattctccca tttcaagtga caaatcacaa atagtagtat 
002461 tttctctgta gagtttatag aacattgtta tatcctataa aataaaacag agtaaggttc 
002521 agcttcagct cgacagctca tgcattacag caataacttt tttttttcat tatttcattt 
002581 gaatcatgct gattgatgat gtttacgtgt ggtagctccg gtggagaaat tgttgaggat 
002641 agtggtgatc aaggagatca aaggatcaca atacggcgtg cagctggaga gttcagtgcg 
002701 tgaccgtctc gtgtcagtag acaagtacga ggaggatgaa gaagaggctc tggagaaggt 
002761 caccgaattc tttcagtcca agtatttcaa gcccaactcc gtcatcacct tccactttcc 
002821 taccacccct ggaattgcag aggtataatc ttgtagagta ctccttatat tcagctgggt 
002881 ttggttaaga tatcaagtga tcaaatcttt gttcttgcaa acctaattga atcatgcata 
002941 tatgtgtgca gatatcattt gtgacagaag gcaagggcga ggcgaagctg acagtggaga 
003001 acaagaatgt ggccgagatg attcagaagt ggtacctggg tggagaatct gcagtttctc 
003061 cgacgactgt gaagagcctg gcagatcaat tcgcagcact gctctctgca tgaggcatgg 
003121 agtaataaac tactgtagta atgttgcccg tttccctttc atttttaatt cgatcatgct 
003181 ttgatttgtc cagctgctct catgtgcatg ctacaattga taatggtatt gatttcccta 
003241 ct

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AV916691 bags19e21 530
more... (Total Hit Count: 4 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ635291 whdp20l08 653
more... (Total Hit Count: 16 )
/rice/oryzabase